←Back to structures
ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00287
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00287
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-130_234-241
Domain cluster:
rep: IMGVR_UViG_3300000153_000287-3300000153-SI39nov09_135mDRAFT_10034313__D64-189
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xqkA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 41.0 | 4.08e-01 | 97.8% | 63.9% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 38.0 | 4.20e-01 | 99.3% | 79.8% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 40.0 | 3.84e-01 | 100.0% | 64.5% |
| 2xzm203 | 1.10.168.20 | Mainly Alpha › Orthogonal Bundle › Phosducin; domain 2 › Ribosomal protein S8e, subdomain | 0.53 | 22.0 | 3.17e-01 | 92.6% | 87.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4200537 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 72.0 | 4.64e-01 | 100.0% | 36.5% |
| 4643202 | 2008.1.1.181 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HaeIII | 0.72 | 67.0 | 5.00e-01 | 98.5% | 70.2% |
| 3716897 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.71 | 36.0 | 4.70e-01 | 99.3% | 88.0% |
| 4973214 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.67 | 40.0 | 3.61e-01 | 100.0% | 46.1% |
| 5047552 | 2008.1.1.201 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_CfrBI | 0.66 | 43.0 | 3.25e-01 | 100.0% | 29.3% |
| 5056915 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 37.0 | 3.47e-01 | 100.0% | 46.7% |
| 5057477 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 36.0 | 4.17e-01 | 97.8% | 76.0% |
| 4972570 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.63 | 41.0 | 4.51e-01 | 100.0% | 79.1% |
| 4959003 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.61 | 36.0 | 4.27e-01 | 97.8% | 84.2% |
| 4962258 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.61 | 36.0 | 3.93e-01 | 94.9% | 70.4% |
| 3976034 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 36.0 | 3.89e-01 | 97.8% | 70.4% |
| 4618630 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.60 | 35.0 | 3.65e-01 | 94.9% | 63.2% |
| 5028573 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 37.0 | 3.75e-01 | 94.1% | 61.4% |
| 4991881 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 36.0 | 4.01e-01 | 97.1% | 75.5% |
| 4339453 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.59 | 54.0 | 3.96e-01 | 100.0% | 47.2% |
| 2715553 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.59 | 41.0 | 4.34e-01 | 98.5% | 80.0% |
| 3283255 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 37.0 | 4.41e-01 | 99.3% | 91.6% |
| 3965872 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.58 | 53.0 | 4.15e-01 | 100.0% | 69.1% |
| 4950791 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.58 | 51.0 | 4.64e-01 | 100.0% | 72.6% |
| 4464713 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.58 | 40.0 | 3.89e-01 | 96.3% | 64.7% |
| 4634054 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 34.0 | 3.58e-01 | 94.9% | 64.0% |
| 4990214 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 51.0 | 4.57e-01 | 100.0% | 70.5% |
| 4152359 | 2008.1.1.199 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XamI | 0.56 | 44.0 | 3.43e-01 | 99.3% | 41.5% |
| 4225517 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.56 | 51.0 | 4.36e-01 | 100.0% | 74.8% |
| 3388232 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 41.0 | 3.64e-01 | 77.9% | 85.0% |
| 5025921 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 33.0 | 3.65e-01 | 89.0% | 73.6% |
| 5056661 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 39.0 | 3.76e-01 | 100.0% | 66.0% |
| 4954702 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.52 | 35.0 | 3.72e-01 | 99.3% | 76.7% |
| 3289222 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.52 | 38.0 | 2.93e-01 | 75.0% | 97.7% |
| 3253903 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.52 | 48.0 | 4.05e-01 | 100.0% | 64.5% |
| 3948544 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.52 | 38.0 | 3.88e-01 | 100.0% | 79.2% |
D2
high
residues 135-230_258-313
Domain cluster:
rep: rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00062__D137-225_256-306
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 34.0 | 3.30e-01 | 100.0% | 49.4% |
| 2qg7B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 31.0 | 3.73e-01 | 96.7% | 79.2% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 27.0 | 3.61e-01 | 99.3% | 89.3% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 25.0 | 3.09e-01 | 100.0% | 65.3% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.54 | 30.0 | 3.54e-01 | 100.0% | 76.4% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 28.0 | 2.82e-01 | 73.7% | 46.5% |
| 3rvyA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.53 | 34.0 | 3.90e-01 | 89.5% | 87.7% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 38.0 | 3.69e-01 | 92.1% | 71.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030396 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.67 | 38.0 | 4.07e-01 | 100.0% | 63.8% |
| 3683258 | 708.1.1.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY | 0.64 | 28.0 | 3.68e-01 | 100.0% | 72.9% |
| 4991489 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 29.0 | 4.02e-01 | 98.7% | 91.4% |
| 3881582 | 310.2.1.31 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF4455 | 0.59 | 39.0 | 4.64e-01 | 87.5% | 97.1% |
| 5082784 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 31.0 | 3.80e-01 | 100.0% | 88.9% |
| 4942736 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 34.0 | 3.92e-01 | 87.5% | 92.4% |
| 5078655 | 873.1.1.15 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27323 | 0.51 | 34.0 | 3.47e-01 | 90.8% | 69.0% |