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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00300
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00300
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-108
Domain cluster:
rep: MT778839.1__QNH71827.1__P9VFCI_165__00165__D6-122
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 27.2 | 4.90e-06 | 40.8% | 55.3% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 49.0 | 5.61e-01 | 81.6% | 94.7% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 44.0 | 5.07e-01 | 80.6% | 86.8% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.67 | 50.0 | 4.00e-01 | 78.6% | 87.2% |
| 2pl2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 50.0 | 4.04e-01 | 95.1% | 43.3% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.65 | 43.0 | 4.37e-01 | 83.5% | 69.7% |
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.64 | 51.0 | 3.63e-01 | 84.5% | 37.6% |
| 3qmlD00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 48.0 | 3.51e-01 | 79.6% | 38.5% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 45.0 | 3.97e-01 | 100.0% | 50.3% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.63 | 39.0 | 4.53e-01 | 80.6% | 87.7% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 49.0 | 4.27e-01 | 100.0% | 57.0% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.61 | 42.0 | 3.81e-01 | 82.5% | 52.5% |
| 3iv0A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 55.0 | 3.55e-01 | 100.0% | 38.6% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.60 | 39.0 | 4.30e-01 | 99.0% | 82.7% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 36.0 | 4.10e-01 | 78.6% | 79.5% |
| 2bb5A01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 45.0 | 3.26e-01 | 80.6% | 35.2% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 46.0 | 4.36e-01 | 81.6% | 95.1% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 49.0 | 3.68e-01 | 93.2% | 47.8% |
| 3rkoG00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 37.0 | 3.82e-01 | 81.6% | 69.0% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 40.0 | 4.27e-01 | 81.6% | 86.2% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 37.0 | 3.93e-01 | 81.6% | 75.8% |
| 1ezjA01 | 1.10.287.320 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain | 0.55 | 32.0 | 4.08e-01 | 80.6% | 96.8% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 3.73e-01 | 81.6% | 89.3% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 3.69e-01 | 81.6% | 92.9% |
| 1vjxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 3.73e-01 | 81.6% | 95.3% |
| 1oq4A00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.54 | 47.0 | 3.36e-01 | 100.0% | 90.2% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 42.0 | 3.84e-01 | 81.6% | 96.3% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.53 | 41.0 | 3.96e-01 | 82.5% | 89.1% |
| 1hn0A02 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.52 | 46.0 | 3.10e-01 | 95.1% | 38.3% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.52 | 36.0 | 3.22e-01 | 80.6% | 48.1% |
| 1jq5A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 40.0 | 3.25e-01 | 83.5% | 89.8% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.52 | 38.0 | 4.12e-01 | 99.0% | 93.0% |
| 3ha4B00 | 1.20.58.690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 45.0 | 4.33e-01 | 97.1% | 85.8% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279282 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 54.0 | 4.60e-01 | 100.0% | 51.5% |
| 3424395 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.68 | 49.0 | 4.79e-01 | 100.0% | 69.1% |
| 3936156 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 51.0 | 4.09e-01 | 77.7% | 51.6% |
| 3681353 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.67 | 42.0 | 4.62e-01 | 81.6% | 77.6% |
| 4577904 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 45.0 | 4.99e-01 | 81.6% | 88.7% |
| 3666817 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 42.0 | 4.57e-01 | 80.6% | 77.6% |
| 3390488 | 109.4.1.937 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EDRF1 | 0.66 | 56.0 | 4.16e-01 | 90.3% | 68.2% |
| 3680847 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.65 | 43.0 | 4.75e-01 | 82.5% | 86.3% |
| 5038239 | 3843.1.1.31 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q3 | 0.65 | 40.0 | 4.61e-01 | 80.6% | 85.3% |
| 3956597 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.64 | 50.0 | 3.72e-01 | 82.5% | 58.5% |
| 3708428 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 45.0 | 3.67e-01 | 75.7% | 39.5% |
| 5023802 | 3843.1.1.2 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2108 | 0.63 | 40.0 | 4.58e-01 | 80.6% | 92.9% |
| 3786675 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.62 | 39.0 | 4.69e-01 | 78.6% | 100.0% |
| 3647808 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 4.67e-01 | 83.5% | 91.3% |
| 3620970 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 52.0 | 3.87e-01 | 92.2% | 55.6% |
| 5048087 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.60 | 42.0 | 4.18e-01 | 82.5% | 69.5% |
| 3992327 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 49.0 | 3.90e-01 | 89.3% | 92.1% |
| 3695454 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 54.0 | 5.27e-01 | 96.1% | 90.9% |
| 3274169 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 44.0 | 2.84e-01 | 77.7% | 20.0% |
| 4987589 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.40e-01 | 100.0% | 23.6% |
| 3693144 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 4.24e-01 | 94.2% | 90.0% |
| 3927844 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 52.0 | 3.85e-01 | 94.2% | 39.6% |
| 3930124 | 109.25.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN | 0.59 | 44.0 | 4.09e-01 | 79.6% | 93.1% |
| 3182078 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.59 | 53.0 | 3.47e-01 | 100.0% | 32.4% |
| 3995490 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 4.28e-01 | 93.2% | 57.6% |
| 3404805 | 603.2.1.9 ↗ | alpha bundles › STAT-like › STAT › STAT › 7tm_6 | 0.58 | 51.0 | 3.78e-01 | 100.0% | 81.4% |
| 3699980 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 4.40e-01 | 97.1% | 75.0% |
| 5047536 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.58 | 51.0 | 3.30e-01 | 100.0% | 52.7% |
| 3560386 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 50.0 | 3.93e-01 | 94.2% | 68.6% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.57 | 46.0 | 3.32e-01 | 90.3% | 74.3% |
| 3252898 | 109.4.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 | 0.57 | 51.0 | 3.91e-01 | 100.0% | 68.1% |
| 3584462 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 48.0 | 3.82e-01 | 94.2% | 46.3% |
| 3249775 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 49.0 | 3.14e-01 | 94.2% | 23.2% |
| 4682342 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.56 | 50.0 | 3.23e-01 | 100.0% | 51.5% |
| 4140470 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.56 | 50.0 | 3.22e-01 | 100.0% | 52.9% |
| 3514283 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 43.0 | 3.78e-01 | 82.5% | 69.0% |
| 3496772 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.55 | 49.0 | 2.99e-01 | 100.0% | 27.7% |
| 3593201 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 2.96e-01 | 100.0% | 20.0% |
| 4544629 | 109.4.1.1919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO | 0.55 | 48.0 | 4.07e-01 | 97.1% | 68.8% |
| 3912405 | 109.4.1.219 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TINF2_N | 0.54 | 41.0 | 3.38e-01 | 98.1% | 41.5% |
| 5055323 | 3843.1.1.20 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Proton_antipo_M | 0.54 | 45.0 | 4.32e-01 | 100.0% | 79.8% |
| 3401667 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 46.0 | 3.32e-01 | 97.1% | 36.0% |
| 5002309 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 40.0 | 3.35e-01 | 99.0% | 46.3% |
| 3410446 | 109.4.1.517 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med24_N | 0.53 | 44.0 | 3.45e-01 | 93.2% | 66.3% |
| 3747704 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 46.0 | 4.22e-01 | 95.1% | 90.4% |
| 3891225 | 109.4.1.274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Usp38-like_N | 0.53 | 45.0 | 3.53e-01 | 95.1% | 56.6% |
| 3600771 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.47e-01 | 89.3% | 58.1% |
| 3735746 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 46.0 | 3.08e-01 | 100.0% | 75.7% |
| 3996096 | 109.4.1.590 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 | 0.52 | 45.0 | 3.52e-01 | 100.0% | 72.2% |
| 3601705 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 45.0 | 3.21e-01 | 100.0% | 90.4% |
| 3690251 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 3.33e-01 | 90.3% | 59.5% |
| 4076791 | 590.1.1.1 ↗ | alpha bundles › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Dak2 | 0.50 | 44.0 | 3.46e-01 | 100.0% | 59.6% |