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AM265638.1__CAK25940.1__X__00007

Bact-Vir

AM265638.1__CAK25940.1__X__00007

Identity

Accession:
AM265638 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Phikmvvirus› Pseudomonas_phage_LKD16

TaxID: 386792

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: rep: OK040794.1__UDL16748.1__SEA_ATUIN_154__00154__D2-50
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.79 53.0 4.02e-01 70.2% 82.9%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.77 62.0 5.29e-01 95.7% 55.4%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.77 61.0 5.23e-01 91.5% 54.7%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.77 53.0 4.48e-01 74.5% 80.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.46e-01 100.0% 66.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 4.61e-01 100.0% 42.2%
3fhkA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 48.0 3.56e-01 70.2% 81.7%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.71 59.0 4.88e-01 91.5% 52.4%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.70 47.0 2.96e-01 70.2% 30.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 4.93e-01 100.0% 59.3%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.68 55.0 4.59e-01 93.6% 50.0%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.68 46.0 3.66e-01 70.2% 81.2%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 59.0 3.66e-01 100.0% 29.8%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 3.62e-01 100.0% 32.8%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 44.0 2.91e-01 70.2% 27.5%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.64 43.0 3.48e-01 70.2% 36.8%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 53.0 5.37e-01 91.5% 91.5%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 49.0 3.74e-01 83.0% 95.4%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 3.87e-01 100.0% 62.3%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.41e-01 83.0% 81.0%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.63 49.0 3.53e-01 87.2% 38.6%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.84e-01 100.0% 75.8%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.63 47.0 4.00e-01 83.0% 56.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.57e-01 100.0% 91.2%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.60 47.0 4.31e-01 87.2% 69.2%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.60 42.0 3.41e-01 74.5% 87.2%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.60 44.0 3.07e-01 85.1% 27.4%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.81e-01 76.6% 93.8%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 53.0 4.19e-01 100.0% 87.8%
2zdjA00 3.10.450.450 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.76e-01 78.7% 67.6%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.66e-01 85.1% 79.1%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.96e-01 95.7% 65.9%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.70e-01 100.0% 41.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.29e-01 100.0% 95.1%
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 34.0 3.71e-01 91.5% 93.3%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 4.02e-01 93.6% 87.5%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 2.66e-01 87.2% 22.3%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.54 46.0 3.40e-01 100.0% 80.4%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 37.0 3.46e-01 78.7% 62.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 3.62e-01 100.0% 89.1%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.53 41.0 3.67e-01 91.5% 71.6%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 45.0 4.00e-01 100.0% 76.4%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.36e-01 91.5% 59.4%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 36.0 2.41e-01 78.7% 22.3%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.51 43.0 2.98e-01 97.9% 45.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.81 68.0 6.69e-01 93.6% 98.0%
2897753 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.81 56.0 4.76e-01 74.5% 88.3%
4351616 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.80 56.0 4.12e-01 74.5% 66.7%
3632320 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.79 56.0 4.14e-01 74.5% 72.2%
4220914 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.79 55.0 3.93e-01 74.5% 59.3%
4029844 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.79 55.0 4.52e-01 74.5% 76.5%
3958770 10.1.1.40 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.79 53.0 4.20e-01 70.2% 93.3%
3212893 5.1.3.57 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › IKI3 0.77 52.0 3.06e-01 70.2% 16.7%
2816212 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.76 62.0 3.69e-01 91.5% 13.5%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.75 63.0 5.26e-01 100.0% 55.0%
5047667 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 49.0 3.83e-01 70.2% 70.0%
4088587 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.73 58.0 3.54e-01 89.4% 14.4%
3951704 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.72 61.0 5.24e-01 91.5% 90.0%
3837976 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.72 57.0 4.07e-01 89.4% 65.5%
2841859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.22e-01 93.6% 89.2%
4987025 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.70 63.0 3.83e-01 100.0% 71.6%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.08e-01 100.0% 67.1%
4575824 2.8.1.2 ↗ beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.67 56.0 4.94e-01 93.6% 85.7%
None — 0.67 58.0 3.46e-01 100.0% 48.9%
3298595 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.66 58.0 4.05e-01 100.0% 54.2%
3480422 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 4.15e-01 100.0% 67.4%
5048388 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.65 51.0 3.77e-01 85.1% 40.0%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.64 55.0 4.58e-01 100.0% 56.5%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.31e-01 100.0% 70.5%
4971298 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.64 55.0 4.76e-01 97.9% 78.7%
3707172 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 3.99e-01 100.0% 48.6%
4000212 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 48.0 2.95e-01 87.2% 19.4%
3250427 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 55.0 4.25e-01 100.0% 70.0%
4981259 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.63 52.0 4.63e-01 89.4% 70.8%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.81e-01 100.0% 73.4%
4012965 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.63 42.0 2.70e-01 70.2% 17.9%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.97e-01 100.0% 87.3%
4431016 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.62 51.0 3.83e-01 93.6% 80.0%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.62 49.0 4.49e-01 91.5% 72.3%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 49.0 3.00e-01 89.4% 16.5%
3604572 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.61 50.0 4.41e-01 91.5% 71.4%
3838248 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.59 45.0 3.62e-01 87.2% 68.6%
4974000 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 48.0 4.34e-01 91.5% 70.8%
4030334 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 46.0 3.71e-01 95.7% 54.7%
3388925 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 48.0 3.90e-01 95.7% 60.0%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.13e-01 95.7% 74.5%
1295901 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 44.0 3.39e-01 93.6% 43.6%
3252177 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.72e-01 100.0% 80.0%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.56 48.0 3.31e-01 97.9% 78.8%
4521206 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 39.0 3.55e-01 80.9% 60.0%
4935286 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 43.0 3.10e-01 100.0% 44.1%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.54 44.0 3.16e-01 100.0% 45.6%
1565067 9.23.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.54 45.0 3.46e-01 97.9% 95.9%
3171401 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 45.0 2.97e-01 100.0% 60.9%
4961406 304.136.1.0 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.52 45.0 3.63e-01 100.0% 97.9%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.50 40.0 3.51e-01 100.0% 58.8%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.50 43.0 4.11e-01 100.0% 94.5%