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AM265639.1__CAK24973.1__X__00005
Bact-VirAM265639.1__CAK24973.1__X__00005
Identity
- Accession:
- AM265639 ↗
- Kingdom:
- phage
Quality
91.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Stubburvirus›
Pseudomonas_phage_LKA1
TaxID: 386793
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-97
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 39.0 | 4.42e-01 | 73.4% | 78.3% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 39.0 | 4.23e-01 | 72.3% | 74.7% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.62 | 43.0 | 4.61e-01 | 93.6% | 82.7% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.62 | 38.0 | 4.31e-01 | 76.6% | 82.9% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 38.0 | 3.41e-01 | 74.5% | 84.1% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.53 | 42.0 | 3.93e-01 | 81.9% | 81.4% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.53 | 37.0 | 4.04e-01 | 72.3% | 92.4% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 46.0 | 3.99e-01 | 100.0% | 95.4% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.51 | 35.0 | 3.23e-01 | 71.3% | 74.4% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.51 | 32.0 | 3.59e-01 | 88.3% | 83.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3813420 | 3345.1.1.1 ↗ | alpha arrays › MRG domain › MRG domain › MRG domain › MRG | 0.53 | 41.0 | 3.52e-01 | 84.0% | 61.9% |
| 3890108 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.53 | 41.0 | 3.91e-01 | 83.0% | 87.3% |
| 3503459 | 109.4.1.942 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOT1_connector | 0.53 | 39.0 | 3.07e-01 | 78.7% | 52.5% |
| 3213714 | 101.1.2.577 ↗ | alpha arrays › HTH › HTH › winged helix domain › SPK | 0.52 | 41.0 | 3.68e-01 | 88.3% | 79.3% |
| 3239312 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.50 | 41.0 | 3.99e-01 | 91.5% | 97.2% |
| 3272819 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.50 | 44.0 | 4.21e-01 | 96.8% | 84.5% |