←Back to structures
AM265639.1__CAK25010.1__X__00043
Bact-VirAM265639.1__CAK25010.1__X__00043
Identity
- Accession:
- AM265639 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Stubburvirus›
Pseudomonas_phage_LKA1
TaxID: 386793
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-147
Domain cluster:
rep: LC778449.1__BES79676.1__X__00040__D72-149
D2
medium
residues 159-204
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j2jB00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.88 | 64.0 | 6.76e-01 | 78.3% | 90.2% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.71 | 51.0 | 4.82e-01 | 78.3% | 63.2% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 53.0 | 5.21e-01 | 87.0% | 90.2% |
| 7vevA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.68 | 60.0 | 3.74e-01 | 100.0% | 29.4% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 56.0 | 5.40e-01 | 100.0% | 83.6% |
| 2wwwC01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 46.0 | 4.54e-01 | 78.3% | 71.2% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.65 | 44.0 | 3.42e-01 | 78.3% | 31.2% |
| 2fh0A00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.64 | 51.0 | 4.33e-01 | 91.3% | 59.3% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 47.0 | 4.56e-01 | 80.4% | 72.5% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 45.0 | 3.39e-01 | 78.3% | 40.3% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 45.0 | 4.41e-01 | 78.3% | 80.0% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.61 | 48.0 | 4.33e-01 | 100.0% | 62.3% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.61 | 48.0 | 4.21e-01 | 91.3% | 81.3% |
| 3fd9A01 | 1.10.8.520 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ExsD N-terminal domain-like | 0.60 | 45.0 | 4.12e-01 | 95.7% | 58.3% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 47.0 | 4.44e-01 | 93.5% | 73.7% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 40.0 | 3.52e-01 | 80.4% | 48.8% |
| 1dd3A01 | 1.20.5.710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.55 | 38.0 | 3.69e-01 | 78.3% | 64.9% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.52 | 36.0 | 3.52e-01 | 95.7% | 66.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3692552 | 5071.3.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 | 0.81 | 69.0 | 6.24e-01 | 100.0% | 89.2% |
| 3232333 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 56.0 | 3.36e-01 | 76.1% | 11.3% |
| 3963979 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.74 | 60.0 | 5.52e-01 | 97.8% | 72.3% |
| 3402200 | 196.1.1.0 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS | 0.71 | 59.0 | 4.26e-01 | 95.7% | 47.4% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.70 | 52.0 | 4.66e-01 | 82.6% | 57.6% |
| 3598713 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.69 | 44.0 | 4.45e-01 | 71.7% | 66.7% |
| 4411875 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 3.35e-01 | 80.4% | 60.0% |
| 4371208 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.62 | 42.0 | 3.66e-01 | 71.7% | 42.3% |
| 3760771 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 49.0 | 4.18e-01 | 100.0% | 51.8% |
| 2630371 | 2003.1.4.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2_2 | 0.61 | 51.0 | 3.85e-01 | 95.7% | 49.6% |
| 3452986 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 39.0 | 4.03e-01 | 91.3% | 80.0% |
D3
medium
residues 226-256
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 67.0 | 5.52e-01 | 100.0% | 50.0% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.81 | 67.0 | 4.69e-01 | 100.0% | 29.2% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.80 | 66.0 | 4.54e-01 | 100.0% | 26.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.78 | 62.0 | 4.06e-01 | 100.0% | 20.7% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 62.0 | 4.35e-01 | 93.5% | 75.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 64.0 | 5.27e-01 | 100.0% | 50.8% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.74 | 61.0 | 4.27e-01 | 100.0% | 27.0% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.70 | 59.0 | 3.35e-01 | 93.5% | 32.1% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.68 | 51.0 | 4.22e-01 | 90.3% | 52.3% |