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AP000400.1__BAB19553.1__X__00006
Bact-VirAP000400.1__BAB19553.1__X__00006
Identity
- Accession:
- AP000400 ↗
- Kingdom:
- phage
Quality
96.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07308.19 best | DUF1456 | 88.8 | 3.00e-25 | 100.0% | 97.1% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 63.0 | 6.48e-01 | 98.5% | 92.2% |
| 3me5A01 | 1.10.260.140 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.73 | 53.0 | 5.39e-01 | 95.5% | 79.7% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 40.0 | 2.89e-01 | 95.5% | 21.4% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.59 | 49.0 | 3.71e-01 | 100.0% | 38.3% |
| 2ou6A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 49.0 | 3.67e-01 | 98.5% | 77.6% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.57 | 30.0 | 2.92e-01 | 76.1% | 45.2% |
| 2lhiA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 47.0 | 3.57e-01 | 95.5% | 51.7% |
| 3nx3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 47.0 | 3.31e-01 | 100.0% | 75.7% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 33.0 | 3.13e-01 | 83.6% | 50.6% |
| 6arhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 3.04e-01 | 97.0% | 96.0% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.53 | 36.0 | 3.42e-01 | 73.1% | 55.1% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.52 | 39.0 | 3.43e-01 | 85.1% | 96.5% |
| 3kwlA02 | 1.10.1060.20 | Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › | 0.52 | 37.0 | 3.25e-01 | 79.1% | 55.8% |
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 36.0 | 3.57e-01 | 76.1% | 83.3% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 39.0 | 3.74e-01 | 85.1% | 93.7% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.50 | 37.0 | 3.94e-01 | 91.0% | 86.9% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947107 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 1.00 | 92.0 | 8.81e-01 | 95.5% | 85.3% |
| 4008447 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 0.94 | 86.0 | 8.00e-01 | 97.0% | 81.2% |
| 3947954 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.87 | 79.0 | 6.99e-01 | 100.0% | 87.4% |
| 3588819 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 0.86 | 76.0 | 7.33e-01 | 95.5% | 97.3% |
| 3965190 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.80 | 67.0 | 6.80e-01 | 94.0% | 93.8% |
| 2809324 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.77 | 65.0 | 6.36e-01 | 98.5% | 84.9% |
| 4946761 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.77 | 64.0 | 6.33e-01 | 98.5% | 85.7% |
| 3944210 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.69 | 59.0 | 5.45e-01 | 94.0% | 83.5% |
| 4276274 | 198.2.1.1 ↗ | alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId | 0.61 | 44.0 | 4.48e-01 | 77.6% | 78.5% |
| 3926720 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.59 | 50.0 | 5.05e-01 | 100.0% | 100.0% |
| 4995540 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.57 | 47.0 | 4.69e-01 | 100.0% | 91.4% |
| 4049531 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.56 | 44.0 | 2.92e-01 | 86.6% | 91.3% |
| 3931766 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.55 | 41.0 | 3.60e-01 | 98.5% | 54.0% |
| 3665583 | 3636.1.1.3 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › ARCH_RTEL1 | 0.55 | 46.0 | 3.45e-01 | 97.0% | 55.0% |
| 3941721 | 635.1.1.1 ↗ | alpha arrays › YgfB-like › YgfB-like › YgfB-like › UPF0149 | 0.53 | 42.0 | 3.24e-01 | 94.0% | 52.5% |
| 4973927 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.53 | 45.0 | 3.00e-01 | 98.5% | 49.8% |
| 5000591 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.52 | 36.0 | 3.42e-01 | 74.6% | 100.0% |
| 3795697 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.52 | 40.0 | 4.09e-01 | 89.6% | 89.2% |
| 4989692 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 45.0 | 3.29e-01 | 100.0% | 84.7% |
| 3394510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.51 | 42.0 | 4.03e-01 | 100.0% | 80.0% |
| 3970615 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.51 | 42.0 | 3.00e-01 | 97.0% | 98.3% |
D2
high
residues 86-155
Domain cluster:
rep: AP000400.1__BAB19553.1__X__00006__D3-69
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07308.19 best | DUF1456 | 86.7 | 1.40e-24 | 95.7% | 95.6% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.79 | 65.0 | 6.42e-01 | 90.0% | 84.9% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 62.0 | 6.50e-01 | 94.3% | 93.8% |
| 1mdyA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.69 | 37.0 | 3.80e-01 | 100.0% | 52.9% |
| 6lo8F01 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.64 | 41.0 | 4.17e-01 | 87.1% | 66.7% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 41.0 | 3.47e-01 | 70.0% | 71.5% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.60 | 53.0 | 4.19e-01 | 100.0% | 68.5% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 39.0 | 3.76e-01 | 71.4% | 80.0% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 44.0 | 3.57e-01 | 82.9% | 57.1% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 47.0 | 3.67e-01 | 94.3% | 83.4% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 44.0 | 3.50e-01 | 84.3% | 63.0% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 38.0 | 3.54e-01 | 70.0% | 57.1% |
| 2lhiA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 49.0 | 3.70e-01 | 98.6% | 95.5% |
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.55 | 40.0 | 4.02e-01 | 77.1% | 87.5% |
| 3nx3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 44.0 | 3.12e-01 | 94.3% | 77.7% |
| 1n4qB00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 37.0 | 2.41e-01 | 72.9% | 68.8% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 38.0 | 3.73e-01 | 81.4% | 98.7% |
| 2i88A00 | 1.10.490.30 | Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin | 0.51 | 40.0 | 3.10e-01 | 90.0% | 55.6% |
| 4ewcA03 | 1.20.120.1660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 41.0 | 4.07e-01 | 90.0% | 93.3% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.51 | 43.0 | 3.51e-01 | 100.0% | 60.0% |
| 3i1aA03 | 1.20.58.840 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 41.0 | 3.61e-01 | 97.1% | 72.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3982126 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 0.93 | 86.0 | 7.94e-01 | 97.1% | 80.0% |
| 3947107 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 0.92 | 80.0 | 7.85e-01 | 92.9% | 86.7% |
| 3588819 | 101.1.4.47 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 | 0.86 | 73.0 | 7.16e-01 | 91.4% | 97.3% |
| 3965190 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.79 | 64.0 | 6.61e-01 | 90.0% | 93.8% |
| 2809324 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.78 | 65.0 | 6.44e-01 | 98.6% | 86.3% |
| 3944210 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.70 | 57.0 | 5.38e-01 | 90.0% | 83.5% |
| 4230774 | 101.1.9.117 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc | 0.69 | 50.0 | 4.58e-01 | 100.0% | 57.9% |
| 4252455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 39.0 | 3.54e-01 | 92.9% | 46.3% |
| 3514709 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.63 | 45.0 | 4.84e-01 | 100.0% | 96.4% |
| 3678317 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.58 | 48.0 | 4.43e-01 | 91.4% | 90.0% |
| 3924238 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.56 | 46.0 | 3.24e-01 | 100.0% | 27.7% |
| 3502563 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 39.0 | 3.38e-01 | 72.9% | 74.3% |
| 3663497 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 39.0 | 3.04e-01 | 77.1% | 33.5% |
| 5010642 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.55 | 38.0 | 3.25e-01 | 71.4% | 53.6% |
| 3795251 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 37.0 | 3.72e-01 | 71.4% | 87.1% |
| 3970615 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.53 | 45.0 | 3.20e-01 | 97.1% | 99.6% |
| 4032 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.53 | 44.0 | 3.39e-01 | 95.7% | 84.2% |
| 4049531 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.51 | 39.0 | 2.65e-01 | 87.1% | 31.0% |