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AP000400.1__BAB19556.1__X__00009
Bact-VirAP000400.1__BAB19556.1__X__00009
Identity
- Accession:
- AP000400 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-73
Domain cluster:
rep: OR088901.1__WJZ27839.1__MOMMJLID_CDS0031__00031__D2-53
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13411.13 best | MerR_1 | 68.4 | 6.60e-19 | 100.0% | 98.6% |
| PF00376.30 | MerR | 48.9 | 6.30e-13 | 54.3% | 100.0% |
D2
high
residues 77-194
Domain cluster:
representative
Pfam (2)
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fhnA03 | 1.10.357.100 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C | 0.67 | 51.0 | 4.48e-01 | 79.7% | 90.2% |
| 3brsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 37.0 | 3.62e-01 | 100.0% | 54.5% |
| 3zheB02 | 1.20.190.60 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.59 | 51.0 | 4.42e-01 | 94.1% | 89.5% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.57 | 50.0 | 4.63e-01 | 98.3% | 91.0% |
| 5hc8A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.57 | 48.0 | 3.86e-01 | 93.2% | 49.6% |
| 2h3hB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 37.0 | 3.40e-01 | 100.0% | 49.7% |
| 6imeA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.56 | 49.0 | 3.82e-01 | 96.6% | 42.9% |
| 3l49A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 3.65e-01 | 100.0% | 57.1% |
| 7paxA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.56 | 46.0 | 3.65e-01 | 93.2% | 44.5% |
| 4ru1A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 36.0 | 3.42e-01 | 100.0% | 53.4% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 43.0 | 4.09e-01 | 85.6% | 92.4% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 48.0 | 3.91e-01 | 100.0% | 50.9% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.54 | 43.0 | 3.51e-01 | 93.2% | 45.3% |
| 5jicA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 37.0 | 3.24e-01 | 71.2% | 74.2% |
| 3lszA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 38.0 | 3.79e-01 | 73.7% | 76.8% |
| 2iaiA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 44.0 | 4.25e-01 | 90.7% | 97.1% |
| 2yhwA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.60e-01 | 79.7% | 73.2% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 33.0 | 3.10e-01 | 88.1% | 51.4% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 37.0 | 3.12e-01 | 74.6% | 84.7% |
| 3g1wA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 35.0 | 3.30e-01 | 100.0% | 55.5% |
| 2qe6A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 37.0 | 2.92e-01 | 100.0% | 34.2% |
| 4u2xF00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 46.0 | 4.00e-01 | 98.3% | 89.7% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 3.27e-01 | 99.2% | 59.0% |
| 4f3hA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.50 | 41.0 | 3.29e-01 | 89.8% | 98.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977672 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 1.00 | 95.0 | 8.23e-01 | 96.6% | 69.9% |
| 1688882 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.73 | 49.0 | 5.59e-01 | 93.2% | 94.2% |
| 3840124 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 45.0 | 4.44e-01 | 70.3% | 86.4% |
| 3251874 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.60 | 53.0 | 4.07e-01 | 96.6% | 45.0% |
| 3596035 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 53.0 | 4.48e-01 | 100.0% | 65.5% |
| 3407107 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.58 | 47.0 | 4.99e-01 | 90.7% | 97.1% |
| 5051308 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.58 | 49.0 | 3.92e-01 | 94.1% | 47.3% |
| 3591898 | 109.4.1.62 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nic96 | 0.56 | 51.0 | 3.17e-01 | 100.0% | 24.6% |
| 4099134 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.55 | 46.0 | 3.76e-01 | 93.2% | 50.2% |
| 3537539 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.55 | 50.0 | 3.17e-01 | 100.0% | 38.5% |
| 3230403 | 109.4.1.886 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK | 0.55 | 49.0 | 3.85e-01 | 100.0% | 79.6% |
| 3606296 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 3.55e-01 | 99.2% | 93.7% |
| 3494025 | 109.4.1.14 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 | 0.54 | 50.0 | 3.97e-01 | 100.0% | 77.0% |
| 3197984 | 109.4.1.62 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nic96 | 0.54 | 48.0 | 2.96e-01 | 99.2% | 75.8% |
| 4968547 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.54 | 30.0 | 3.00e-01 | 92.4% | 50.0% |
| 3615180 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 3.09e-01 | 100.0% | 95.7% |
| 3713653 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.53 | 48.0 | 4.18e-01 | 98.3% | 80.6% |
| 3246265 | 6171.1.1.2 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › KDM6_C-hel | 0.52 | 45.0 | 3.93e-01 | 96.6% | 90.2% |
| 4536396 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.51 | 45.0 | 3.82e-01 | 98.3% | 67.2% |
| 3518143 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.51 | 45.0 | 3.80e-01 | 100.0% | 73.2% |
| 5002555 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.50 | 42.0 | 3.61e-01 | 90.7% | 59.3% |