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AP001553.1__BAA97616.1__X__00030

Bact-Vir

AP001553.1__BAA97616.1__X__00030

Identity

Accession:
AP001553 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06260.19 best DUF1024 37.1 4.40e-09 63.0% 23.8%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 54.0 3.82e-01 95.7% 94.9%
3tvkA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 52.0 3.66e-01 100.0% 45.9%
1d8cA01 3.20.20.360 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 0.64 47.0 2.71e-01 80.4% 31.2%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.63 39.0 3.52e-01 71.7% 43.9%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.63 42.0 3.34e-01 87.0% 32.4%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.63 43.0 2.77e-01 73.9% 32.2%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.62 53.0 3.23e-01 100.0% 22.8%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 41.0 2.63e-01 97.8% 14.3%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 45.0 2.66e-01 82.6% 87.1%
3mt1A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.60 42.0 3.06e-01 80.4% 25.5%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.60 51.0 3.36e-01 100.0% 53.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 44.0 3.69e-01 97.8% 42.9%
3zbqA00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.59 48.0 2.99e-01 100.0% 48.3%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.58 47.0 2.82e-01 91.3% 34.8%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.05e-01 100.0% 27.5%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 41.0 2.76e-01 78.3% 88.2%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.58 42.0 3.84e-01 93.5% 58.7%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 33.0 3.50e-01 76.1% 59.0%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.57 35.0 2.70e-01 97.8% 26.7%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.66e-01 82.6% 23.7%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.56 43.0 3.06e-01 82.6% 87.3%
1t02A02 3.90.770.10 Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.56 38.0 2.47e-01 73.9% 17.4%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 46.0 3.84e-01 95.7% 81.0%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.50e-01 100.0% 48.1%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.55 33.0 3.47e-01 82.6% 67.5%
1ju2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.70e-01 91.3% 56.3%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 41.0 3.43e-01 89.1% 50.5%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.29e-01 100.0% 38.8%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.54 41.0 3.07e-01 95.7% 56.9%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 2.85e-01 95.7% 87.9%
5lp7E01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 42.0 2.90e-01 100.0% 78.3%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.24e-01 97.8% 92.4%
3snxA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 2.59e-01 100.0% 30.5%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 2.76e-01 97.8% 86.5%
1mdbA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.52 38.0 3.25e-01 80.4% 82.9%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 42.0 2.60e-01 100.0% 90.0%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 2.83e-01 84.8% 72.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3889205 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.65 48.0 3.18e-01 80.4% 50.5%
4031040 301.8.1.0 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.65 41.0 3.02e-01 73.9% 25.0%
3413958 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.63 50.0 4.18e-01 97.8% 49.4%
3169604 2004.1.1.495 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.63 44.0 2.83e-01 100.0% 15.2%
3337044 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.62 52.0 3.17e-01 100.0% 31.0%
3651664 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.61 53.0 3.12e-01 100.0% 43.7%
4032115 2008.1.1.102 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 0.61 49.0 3.76e-01 97.8% 40.8%
3574593 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.60 43.0 2.76e-01 89.1% 16.0%
4992209 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.60 47.0 3.35e-01 84.8% 54.3%
4944645 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.60 46.0 2.71e-01 100.0% 9.4%
3908432 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.60 50.0 2.97e-01 100.0% 33.3%
3687315 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.27e-01 97.8% 22.2%
4496501 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 46.0 2.80e-01 87.0% 86.9%
4140359 190.1.1.7 alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox 0.60 41.0 2.96e-01 73.9% 33.3%
7412 219.1.1.46 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF2026 0.60 51.0 3.38e-01 100.0% 54.5%
4064579 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.59 51.0 3.84e-01 97.8% 64.3%
3578504 7564.1.1.1 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.59 43.0 2.89e-01 78.3% 42.2%
3338842 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.59 50.0 2.97e-01 100.0% 34.7%
3815071 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 44.0 2.51e-01 82.6% 21.2%
4959825 5054.1.1.7 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.59 47.0 2.73e-01 93.5% 65.9%
3775191 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 2.76e-01 100.0% 13.9%
4095036 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.59 49.0 2.82e-01 95.7% 10.2%
3681879 67.1.1.5 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ 0.59 47.0 3.90e-01 97.8% 75.8%
3238364 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.58 49.0 2.96e-01 100.0% 28.6%
3579593 904.1.1.32 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › Arf 0.58 46.0 2.67e-01 87.0% 14.9%
3211040 910.1.1.1 few secondary structure elements › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › DM 0.58 45.0 3.85e-01 87.0% 52.7%
3924318 6166.1.1.0 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.58 40.0 2.77e-01 78.3% 86.2%
3742405 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.58 46.0 3.79e-01 95.7% 47.4%
3303720 3336.1.1.1 alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.57 44.0 2.63e-01 100.0% 10.3%
3509317 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.49e-01 95.7% 83.3%
1382449 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 42.0 2.97e-01 93.5% 24.5%
5074015 101.1.1.543 alpha arrays › HTH › HTH › Three-helical HTH › Dala_Dala_lig_C 0.56 47.0 4.00e-01 97.8% 93.8%
3782119 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 46.0 3.94e-01 100.0% 56.2%
4030386 206.1.3.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.56 47.0 2.77e-01 100.0% 99.3%
3517280 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 40.0 2.44e-01 84.8% 13.2%
3939311 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 48.0 3.67e-01 100.0% 86.4%
3476200 109.2.1.24 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement 0.55 46.0 2.77e-01 100.0% 34.1%
3716174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 47.0 3.64e-01 100.0% 46.4%
3710645 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 2.61e-01 100.0% 7.0%
4035697 5054.1.1.7 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.55 39.0 3.03e-01 80.4% 98.3%
3985490 192.2.1.5 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.54 45.0 3.43e-01 100.0% 49.2%
3892129 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.54 42.0 3.00e-01 91.3% 27.9%
4030791 4038.1.1.2 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 0.54 45.0 2.80e-01 100.0% 57.0%
3246861 7564.1.1.1 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.54 38.0 2.57e-01 80.4% 47.1%
4243212 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.54 47.0 2.59e-01 100.0% 6.8%
3264775 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 41.0 2.53e-01 100.0% 11.8%
3635617 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 40.0 4.03e-01 91.3% 97.8%
3993358 11.1.1.890 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26190 0.52 41.0 2.99e-01 95.7% 29.7%
3951270 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.52 43.0 2.93e-01 97.8% 23.1%
4939277 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.52 36.0 2.63e-01 80.4% 24.1%
3689284 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 37.0 2.44e-01 78.3% 70.7%
3694998 101.1.1.361 alpha arrays › HTH › HTH › Three-helical HTH › Beta-prop_RSE1_1st 0.52 37.0 2.19e-01 80.4% 35.6%
3927225 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.75e-01 95.7% 21.1%
4014690 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.52 45.0 2.82e-01 100.0% 21.2%
4977033 298.1.1.23 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC_1 0.50 37.0 2.67e-01 89.1% 38.9%