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AP008983.1__BAE47715.1__CST017__00017
Bact-VirAP008983.1__BAE47715.1__CST017__00017
Identity
- Accession:
- AP008983 ↗
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68_80-132
Domain cluster:
rep: ACSJ01000019.1__EES90262.1__CLG_B2197__00003__D2-153
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kg4A00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.79 | 74.0 | 6.35e-01 | 100.0% | 74.5% |
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.78 | 73.0 | 5.88e-01 | 100.0% | 77.6% |
| 3vzhA00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.78 | 73.0 | 6.10e-01 | 99.2% | 68.0% |
| 3x1lB03 | 2.60.40.4350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.72 | 57.0 | 6.11e-01 | 96.7% | 95.2% |
| 4n77A00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 67.0 | 5.62e-01 | 99.2% | 66.2% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 47.0 | 4.87e-01 | 100.0% | 80.2% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 37.0 | 3.93e-01 | 97.5% | 68.3% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 36.0 | 4.11e-01 | 94.2% | 81.2% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 37.0 | 3.98e-01 | 97.5% | 75.7% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 49.0 | 5.10e-01 | 99.2% | 100.0% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 44.0 | 4.78e-01 | 100.0% | 100.0% |
| 1uunA02 | 2.10.300.10 | Mainly Beta › Ribbon › Porin MspA ribbon fold › Porin MspA ribbon domain | 0.55 | 24.0 | 3.60e-01 | 78.5% | 96.2% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 47.0 | 4.87e-01 | 99.2% | 99.1% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 43.0 | 4.72e-01 | 97.5% | 100.0% |
| 5t89X01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.77e-01 | 95.9% | 84.3% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.94e-01 | 96.7% | 82.0% |
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 42.0 | 4.59e-01 | 99.2% | 100.0% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 48.0 | 4.87e-01 | 99.2% | 99.1% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 44.0 | 4.67e-01 | 100.0% | 98.1% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 28.0 | 3.24e-01 | 89.3% | 66.3% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 4.60e-01 | 100.0% | 92.2% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 4.68e-01 | 99.2% | 96.6% |
| 4exkA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.84e-01 | 98.3% | 81.7% |
| 5lf5A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.91e-01 | 96.7% | 89.2% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 30.0 | 3.46e-01 | 99.2% | 79.8% |
| 6u6pA01 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.52 | 29.0 | 3.46e-01 | 75.2% | 82.1% |
| 2xh6B01 | 2.170.15.20 | Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › | 0.51 | 45.0 | 4.05e-01 | 98.3% | 98.8% |
| 2gx8A02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.99e-01 | 96.7% | 92.9% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 46.0 | 4.53e-01 | 100.0% | 97.7% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952413 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.87 | 79.0 | 6.64e-01 | 100.0% | 61.1% |
| 5071665 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.85 | 80.0 | 6.19e-01 | 100.0% | 96.7% |
| 4928785 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.84 | 80.0 | 6.34e-01 | 100.0% | 97.8% |
| 4200050 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.84 | 80.0 | 6.08e-01 | 100.0% | 96.5% |
| 5021424 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.84 | 80.0 | 6.26e-01 | 100.0% | 97.4% |
| 4946705 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.84 | 79.0 | 6.10e-01 | 100.0% | 95.1% |
| 4996327 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.83 | 78.0 | 6.09e-01 | 100.0% | 95.8% |
| 3078808 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.82 | 77.0 | 6.26e-01 | 100.0% | 93.4% |
| 3980749 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.82 | 76.0 | 5.99e-01 | 100.0% | 71.2% |
| 4967166 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.81 | 76.0 | 5.96e-01 | 100.0% | 97.5% |
| 4583752 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.81 | 75.0 | 6.17e-01 | 98.3% | 75.1% |
| 4662659 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.81 | 76.0 | 6.06e-01 | 100.0% | 75.1% |
| 5075411 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.80 | 76.0 | 6.13e-01 | 99.2% | 97.1% |
| 1346899 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.80 | 75.0 | 6.06e-01 | 100.0% | 66.2% |
| 2388895 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.79 | 72.0 | 5.68e-01 | 99.2% | 65.2% |
| 5083152 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.79 | 74.0 | 6.01e-01 | 99.2% | 77.6% |
| 4877693 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.79 | 73.0 | 5.62e-01 | 100.0% | 58.6% |
| 4944267 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.78 | 74.0 | 5.72e-01 | 100.0% | 63.1% |
| 1488213 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.78 | 72.0 | 5.82e-01 | 100.0% | 77.2% |
| 5032167 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.77 | 73.0 | 5.82e-01 | 99.2% | 56.4% |
| 3603230 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.77 | 71.0 | 5.17e-01 | 100.0% | 86.9% |
| 5013689 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.77 | 71.0 | 5.09e-01 | 100.0% | 73.3% |
| 4971609 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.77 | 70.0 | 4.95e-01 | 99.2% | 81.4% |
| 5077675 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.77 | 72.0 | 5.93e-01 | 100.0% | 62.7% |
| 4989910 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.76 | 71.0 | 5.68e-01 | 100.0% | 68.4% |
| 5077338 | 304.51.1.6 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 | 0.75 | 62.0 | 6.08e-01 | 96.7% | 81.5% |
| 4969506 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.67 | 60.0 | 5.65e-01 | 97.5% | 95.8% |
| 4997963 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.66 | 54.0 | 5.70e-01 | 100.0% | 100.0% |
| 5022577 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.66 | 58.0 | 5.56e-01 | 96.7% | 96.4% |
| 5012279 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.65 | 55.0 | 5.37e-01 | 93.4% | 98.5% |
| 4939613 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.65 | 56.0 | 5.47e-01 | 93.4% | 96.9% |
| 5042927 | 304.51.1.22 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › PF29613 | 0.63 | 56.0 | 5.53e-01 | 96.7% | 94.6% |
| 4628096 | 304.51.1.22 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › PF29613 | 0.62 | 54.0 | 5.40e-01 | 95.0% | 96.0% |
| 4936512 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.55 | 40.0 | 4.39e-01 | 77.7% | 100.0% |
| 3585717 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.55 | 44.0 | 4.23e-01 | 99.2% | 74.3% |
| 4943323 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.54 | 43.0 | 4.64e-01 | 100.0% | 99.0% |
| 4573225 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.54 | 41.0 | 4.32e-01 | 100.0% | 87.3% |
| 3511306 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.54 | 43.0 | 4.16e-01 | 99.2% | 76.3% |
| 3577311 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.54 | 25.0 | 2.79e-01 | 76.9% | 51.0% |
| 3790670 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 43.0 | 4.00e-01 | 99.2% | 69.3% |
| 3401330 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 43.0 | 4.32e-01 | 99.2% | 86.7% |
| 2755644 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 42.0 | 4.02e-01 | 97.5% | 72.9% |
| 3784198 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 42.0 | 4.46e-01 | 95.9% | 100.0% |
| 4448436 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 43.0 | 4.21e-01 | 98.3% | 80.8% |
| 4455016 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 44.0 | 4.60e-01 | 100.0% | 98.2% |
| 4339783 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 42.0 | 4.39e-01 | 100.0% | 95.5% |
| 3782679 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 42.0 | 3.55e-01 | 98.3% | 51.0% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.52 | 35.0 | 3.61e-01 | 74.4% | 70.8% |
| 3354933 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 41.0 | 4.32e-01 | 95.9% | 97.1% |
| 3020630 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 42.0 | 3.70e-01 | 99.2% | 58.1% |
| 5040271 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 36.0 | 3.49e-01 | 97.5% | 62.9% |
| 4091380 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.51 | 42.0 | 4.34e-01 | 97.5% | 98.2% |
| 3475570 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.50 | 37.0 | 3.51e-01 | 76.9% | 80.0% |
D2
medium
residues 133-214
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 26.0 | 2.96e-01 | 82.9% | 58.1% |
| 5v7qT00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 35.0 | 3.34e-01 | 70.7% | 78.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3622878 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 34.0 | 3.67e-01 | 84.1% | 78.6% |
| 4940074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.07e-01 | 80.5% | 49.5% |
| 5030173 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 30.0 | 3.02e-01 | 79.3% | 57.5% |