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AP008983.1__BAE47720.1__CST022__00022
Bact-VirAP008983.1__BAE47720.1__CST022__00022
Identity
- Accession:
- AP008983 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.70 | 44.0 | 4.50e-01 | 100.0% | 65.1% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.68 | 51.0 | 3.26e-01 | 81.0% | 82.1% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.65 | 56.0 | 4.60e-01 | 96.4% | 82.5% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.64 | 49.0 | 4.78e-01 | 89.3% | 73.4% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.64 | 56.0 | 4.61e-01 | 97.6% | 80.8% |
| 2g3kA00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.64 | 48.0 | 4.64e-01 | 81.0% | 86.2% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.63 | 46.0 | 4.70e-01 | 76.2% | 85.2% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.61 | 43.0 | 3.87e-01 | 75.0% | 96.8% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 44.0 | 3.30e-01 | 77.4% | 95.4% |
| 2vzcB00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.60 | 45.0 | 3.92e-01 | 78.6% | 72.2% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.60 | 45.0 | 3.91e-01 | 81.0% | 89.1% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.60 | 46.0 | 4.68e-01 | 82.1% | 95.0% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 44.0 | 3.96e-01 | 81.0% | 97.6% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 45.0 | 3.89e-01 | 83.3% | 95.7% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.59 | 35.0 | 3.68e-01 | 94.0% | 64.9% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.59 | 42.0 | 4.19e-01 | 100.0% | 73.0% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 43.0 | 3.81e-01 | 81.0% | 96.2% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 45.0 | 3.84e-01 | 86.9% | 97.2% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 46.0 | 3.57e-01 | 91.7% | 41.8% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 41.0 | 3.64e-01 | 79.8% | 70.4% |
| 2r7rA08 | 1.20.120.1400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 40.0 | 4.06e-01 | 89.3% | 74.4% |
| 1l3pA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.56 | 46.0 | 4.35e-01 | 90.5% | 90.2% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.56 | 48.0 | 4.12e-01 | 98.8% | 79.2% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 3.78e-01 | 86.9% | 95.7% |
| 2xpzA04 | 1.25.40.320 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain | 0.56 | 39.0 | 3.13e-01 | 100.0% | 37.0% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.55 | 39.0 | 3.63e-01 | 76.2% | 58.7% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.55 | 38.0 | 3.25e-01 | 70.2% | 83.5% |
| 5z6bA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 3.34e-01 | 89.3% | 74.2% |
| 1h99A01 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.55 | 41.0 | 3.86e-01 | 79.8% | 92.3% |
| 2eb4D00 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.55 | 41.0 | 2.92e-01 | 79.8% | 56.5% |
| 1n83A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 42.0 | 3.05e-01 | 83.3% | 67.7% |
| 4g0mA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 45.0 | 3.80e-01 | 89.3% | 93.3% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 45.0 | 3.53e-01 | 96.4% | 78.5% |
| 4lmoA00 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.53 | 43.0 | 3.19e-01 | 91.7% | 92.8% |
| 2hkuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 41.0 | 3.25e-01 | 84.5% | 52.4% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 37.0 | 3.78e-01 | 75.0% | 73.8% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 38.0 | 3.27e-01 | 76.2% | 78.4% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 45.0 | 4.32e-01 | 100.0% | 88.9% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.53 | 40.0 | 4.01e-01 | 84.5% | 94.4% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 37.0 | 3.85e-01 | 72.6% | 90.8% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 39.0 | 3.88e-01 | 85.7% | 76.6% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.51 | 39.0 | 3.15e-01 | 83.3% | 68.2% |
| 7y3eA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.51 | 43.0 | 2.75e-01 | 92.9% | 25.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008482 | 3572.1.1.0 ↗ | a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 | 0.79 | 72.0 | 6.59e-01 | 100.0% | 90.0% |
| 5079648 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.67 | 51.0 | 5.03e-01 | 82.1% | 87.8% |
| 5048087 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.65 | 49.0 | 4.60e-01 | 81.0% | 80.0% |
| 4997044 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.65 | 50.0 | 4.67e-01 | 82.1% | 77.1% |
| 5004518 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.65 | 37.0 | 3.91e-01 | 100.0% | 62.7% |
| 5014939 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.64 | 50.0 | 4.27e-01 | 85.7% | 97.2% |
| 5002999 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.63 | 48.0 | 4.98e-01 | 88.1% | 85.0% |
| 5040026 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.63 | 49.0 | 4.17e-01 | 83.3% | 100.0% |
| 3225939 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 46.0 | 4.05e-01 | 81.0% | 80.0% |
| 3177920 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.58 | 46.0 | 3.31e-01 | 86.9% | 68.9% |
| 4027059 | 601.13.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS | 0.58 | 44.0 | 3.77e-01 | 83.3% | 71.7% |
| 3211763 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.57 | 45.0 | 3.80e-01 | 86.9% | 88.7% |
| 3776725 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.57 | 44.0 | 3.57e-01 | 84.5% | 81.2% |
| 4168080 | 192.29.1.104 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 | 0.57 | 42.0 | 3.60e-01 | 81.0% | 80.0% |
| 5079202 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.56 | 43.0 | 3.64e-01 | 83.3% | 84.7% |
| 3628662 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.56 | 47.0 | 3.33e-01 | 100.0% | 72.9% |
| 4957898 | 191.1.1.63 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N | 0.56 | 39.0 | 2.97e-01 | 72.6% | 39.0% |
| 149829 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.55 | 41.0 | 3.77e-01 | 81.0% | 92.9% |
| 3659753 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.54 | 45.0 | 3.15e-01 | 98.8% | 70.3% |
| 5079003 | 1076.1.1.3 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › YhfC | 0.54 | 44.0 | 3.22e-01 | 89.3% | 48.3% |
| 3444036 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.54 | 41.0 | 3.66e-01 | 83.3% | 88.8% |
| 4168740 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.54 | 46.0 | 3.70e-01 | 100.0% | 55.6% |
| 4681331 | 3921.1.1.0 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D | 0.53 | 46.0 | 3.63e-01 | 96.4% | 62.8% |
| 3317282 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.53 | 39.0 | 2.97e-01 | 81.0% | 65.8% |
| 4283243 | 2004.1.1.149 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD | 0.53 | 40.0 | 2.69e-01 | 82.1% | 72.9% |
| 3297600 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.52 | 43.0 | 4.12e-01 | 100.0% | 78.0% |
| 5029495 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.52 | 44.0 | 3.12e-01 | 100.0% | 69.5% |
| 3284134 | 604.24.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C | 0.51 | 38.0 | 3.59e-01 | 91.7% | 66.0% |