←Back to structures
AP008983.1__BAE47721.1__CST023__00023
Bact-VirAP008983.1__BAE47721.1__CST023__00023
Identity
- Accession:
- AP008983 ↗
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67_140-187_218-345
Domain cluster:
rep: SRR1747052_scaffold_19_prodigal-single.1__X__X__00047__D1-25_228-378
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 4.62e-01 | 70.8% | 81.3% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 29.0 | 4.11e-01 | 96.3% | 100.0% |
| 1r17A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 27.0 | 3.30e-01 | 78.6% | 69.6% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 28.0 | 3.88e-01 | 99.6% | 99.2% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 24.0 | 3.45e-01 | 81.1% | 92.1% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.53 | 14.0 | 2.93e-01 | 99.2% | 100.0% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 24.0 | 3.40e-01 | 95.9% | 92.3% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 24.0 | 3.36e-01 | 89.3% | 91.6% |
| 1ztpA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.51 | 32.0 | 3.45e-01 | 99.6% | 70.3% |
| 2bmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 34.0 | 3.97e-01 | 99.2% | 94.8% |
| 1u8zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 34.0 | 3.97e-01 | 98.8% | 98.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013689 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.91 | 87.0 | 7.62e-01 | 98.8% | 99.7% |
| 4967168 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.84 | 79.0 | 7.10e-01 | 97.5% | 100.0% |
| 5031257 | 304.139.1.0 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related | 0.80 | 78.0 | 7.25e-01 | 100.0% | 99.3% |
| 5077837 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.79 | 77.0 | 7.30e-01 | 99.6% | 100.0% |
| 4644476 | 304.139.1.0 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related | 0.78 | 74.0 | 7.01e-01 | 96.7% | 100.0% |
| 4971609 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.78 | 74.0 | 6.33e-01 | 97.9% | 100.0% |
| 2099738 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.78 | 74.0 | 6.28e-01 | 98.4% | 100.0% |
| 3603230 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.75 | 70.0 | 6.31e-01 | 97.1% | 100.0% |
| 1346750 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.74 | 71.0 | 6.08e-01 | 98.8% | 100.0% |
| 3976202 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.74 | 71.0 | 6.10e-01 | 98.4% | 100.0% |
| 2705952 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.66 | 61.0 | 5.70e-01 | 94.7% | 99.0% |
| 5065691 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.66 | 34.0 | 4.70e-01 | 88.9% | 98.3% |
| 4989899 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.65 | 61.0 | 5.68e-01 | 97.9% | 100.0% |
| 5036240 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.65 | 60.0 | 5.97e-01 | 96.7% | 99.6% |
| 2428749 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.65 | 61.0 | 5.75e-01 | 99.2% | 98.6% |
| 4947504 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.63 | 52.0 | 5.60e-01 | 97.5% | 98.1% |
| 3078808 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.63 | 41.0 | 4.41e-01 | 70.4% | 74.5% |
| 5077887 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.61 | 51.0 | 5.47e-01 | 97.1% | 98.1% |
| 4200050 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.61 | 44.0 | 4.39e-01 | 73.3% | 97.6% |
| 4996327 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.61 | 45.0 | 4.58e-01 | 74.9% | 98.3% |
| 5066049 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.60 | 56.0 | 5.63e-01 | 98.4% | 98.3% |
| 4946705 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.60 | 45.0 | 4.51e-01 | 76.1% | 98.0% |
| 4877693 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.59 | 48.0 | 4.75e-01 | 84.8% | 91.4% |
| 4967166 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.59 | 43.0 | 4.39e-01 | 74.5% | 98.8% |
| 5071665 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.58 | 44.0 | 4.43e-01 | 77.4% | 97.6% |
| 1117803 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.58 | 54.0 | 4.83e-01 | 99.6% | 99.7% |
| 5074574 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.58 | 55.0 | 5.40e-01 | 99.6% | 100.0% |
| 4928785 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.58 | 44.0 | 4.60e-01 | 77.8% | 98.7% |
| 5021424 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.57 | 43.0 | 4.48e-01 | 77.8% | 97.8% |
| 4945451 | 304.25.1.11 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 | 0.56 | 28.0 | 3.96e-01 | 77.8% | 100.0% |
| 3979231 | 872.1.1.4 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › DUF4312 | 0.56 | 24.0 | 3.68e-01 | 99.2% | 98.9% |
| 4626960 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 28.0 | 3.95e-01 | 99.2% | 100.0% |
| 3711494 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.54 | 23.0 | 3.57e-01 | 77.8% | 97.9% |
| 4996027 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.53 | 50.0 | 4.87e-01 | 98.4% | 97.3% |
| 4936511 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.52 | 25.0 | 3.63e-01 | 78.2% | 100.0% |
| 2755624 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 27.0 | 3.30e-01 | 70.4% | 76.8% |
| 3024932 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 24.0 | 3.47e-01 | 89.3% | 99.1% |
| 5050142 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 30.0 | 3.81e-01 | 76.5% | 100.0% |
D2
medium
residues 68-139_188-217
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013689 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.63 | 60.0 | 4.01e-01 | 100.0% | 40.1% |
| 4994821 | 2003.1.5.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR | 0.50 | 35.0 | 2.61e-01 | 72.5% | 42.8% |