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AP008983.1__BAE47796.1__CST098__00098

Bact-Vir

AP008983.1__BAE47796.1__CST098__00098

Identity

Accession:
AP008983 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_c-st

TaxID: 12336

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-117
PDB
Domain cluster: rep: HM004124.1__ADG59954.1__Acj9p054__00054__D4-153
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 35.0 3.98e-01 84.2% 68.2%
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 33.0 3.75e-01 88.6% 68.7%
2q7nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 29.0 3.43e-01 81.6% 63.7%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 28.0 3.70e-01 100.0% 82.8%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 33.0 4.03e-01 70.2% 85.9%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 30.0 3.43e-01 85.1% 64.4%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 33.0 4.11e-01 71.1% 91.2%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 36.0 3.90e-01 84.2% 74.2%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 35.0 4.12e-01 71.1% 89.3%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.57 51.0 4.70e-01 99.1% 85.0%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 35.0 3.26e-01 86.0% 48.0%
1fltX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.49e-01 86.0% 68.4%
5e7gA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.51e-01 86.8% 73.8%
5swsE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.01e-01 86.0% 77.5%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 4.42e-01 100.0% 78.2%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.67e-01 70.2% 82.9%
5xctB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.64e-01 86.0% 70.5%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.43e-01 86.0% 70.8%
6hciB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.13e-01 83.3% 61.6%
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.51 37.0 3.13e-01 74.6% 98.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4319035 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.66 33.0 4.06e-01 88.6% 76.8%
4960002 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 31.0 3.42e-01 98.2% 60.0%
4485354 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 35.0 3.84e-01 71.9% 74.5%
5009957 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 3.81e-01 85.1% 75.8%
3508084 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 30.0 3.42e-01 98.2% 70.6%
3578188 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 33.0 2.80e-01 91.2% 35.4%
4981877 221.7.1.0 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.54 31.0 3.50e-01 98.2% 75.3%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.53 34.0 4.11e-01 80.7% 98.7%
3171600 11.1.1.1290 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30300 0.53 37.0 3.81e-01 88.6% 75.5%
3617381 220.1.1.80 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.53 33.0 3.32e-01 91.2% 60.0%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 34.0 4.05e-01 84.2% 100.0%
4947251 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 35.0 3.54e-01 86.0% 67.8%
3384882 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.52 36.0 3.89e-01 85.1% 83.0%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 28.0 3.26e-01 100.0% 75.0%
3726000 211.1.1.3 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › 3-dmu-9_3-mt 0.51 23.0 2.82e-01 78.1% 64.0%
3416239 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 31.0 3.55e-01 79.8% 83.1%
3189283 220.1.1.212 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7613 0.50 35.0 3.15e-01 100.0% 48.8%
3316079 220.1.1.183 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RDR2 0.50 38.0 3.49e-01 98.2% 60.7%
3238566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 29.0 3.17e-01 86.0% 68.4%
D2 high residues 133-175
PDB