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AP008983.1__BAE47819.1__CST121__00121

Bact-Vir

AP008983.1__BAE47819.1__CST121__00121

Identity

Accession:
AP008983 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-109
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.73 45.0 4.98e-01 81.1% 78.6%
5ceeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 48.0 3.73e-01 78.3% 85.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 46.0 3.60e-01 84.9% 84.8%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 43.0 4.54e-01 81.1% 86.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.57 43.0 4.56e-01 80.2% 93.4%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.57 44.0 4.26e-01 84.9% 75.0%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 46.0 4.35e-01 94.3% 79.2%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 40.0 4.13e-01 78.3% 88.3%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.54 34.0 3.12e-01 86.8% 45.2%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.53 39.0 3.81e-01 89.6% 71.1%
1f16A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 42.0 3.56e-01 89.6% 64.1%
3ddeB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 43.0 3.33e-01 90.6% 99.6%
7d5qA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 39.0 3.28e-01 80.2% 87.9%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.51 44.0 3.60e-01 93.4% 87.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 37.0 3.31e-01 76.4% 92.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4993046 103.4.1.30 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 0.75 54.0 6.01e-01 79.2% 94.1%
3285780 142.1.1.26 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Transgly_assoc 0.67 48.0 5.41e-01 88.7% 98.8%
4951660 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.58 44.0 4.69e-01 82.1% 95.6%
3988277 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.58 45.0 3.31e-01 83.0% 43.7%
3850813 5054.1.1.77 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRPM_tetra, YVC1_C 0.58 38.0 2.54e-01 89.6% 16.3%
4063563 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.57 44.0 4.62e-01 90.6% 93.7%
4034551 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.56 44.0 3.22e-01 85.8% 47.9%
4964574 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.56 43.0 3.23e-01 83.0% 32.6%
3601886 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.54 31.0 3.06e-01 97.2% 53.6%
3227034 5069.1.3.65 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF31020 0.54 33.0 3.20e-01 70.8% 55.7%
3527955 5050.1.1.26 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.53 45.0 3.30e-01 92.5% 38.2%
3692484 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 37.0 2.97e-01 71.7% 80.5%
3170063 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.52 47.0 3.90e-01 100.0% 91.1%
3308203 601.1.2.80 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 0.52 41.0 3.48e-01 89.6% 97.5%
4009421 5050.1.1.7 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nuc_H_symport 0.52 36.0 2.96e-01 71.7% 80.5%
4226581 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 39.0 3.11e-01 79.2% 75.2%
3786026 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 39.0 2.96e-01 82.1% 41.1%
5014890 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 37.0 3.17e-01 76.4% 82.9%
4033065 5050.1.1.60 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 0.51 43.0 3.58e-01 92.5% 53.5%
4880365 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 39.0 3.16e-01 82.1% 75.7%
D2 high residues 119-207
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.87 58.0 6.98e-01 83.1% 100.0%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 6.63e-01 91.0% 96.1%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 57.0 5.19e-01 100.0% 68.0%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.07e-01 78.7% 85.5%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 45.0 3.72e-01 84.3% 54.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 48.0 4.07e-01 95.5% 95.4%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 40.0 3.09e-01 100.0% 32.9%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 43.0 3.74e-01 86.5% 93.3%
2c2iA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.46e-01 82.0% 96.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 43.0 3.64e-01 86.5% 87.5%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.68e-01 87.6% 85.5%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.50e-01 87.6% 73.5%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.52 42.0 3.62e-01 86.5% 87.7%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.44e-01 96.6% 97.6%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.38e-01 86.5% 73.2%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 39.0 2.82e-01 80.9% 50.2%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 43.0 3.14e-01 100.0% 92.6%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.48e-01 86.5% 81.0%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.50 38.0 2.94e-01 80.9% 97.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703320 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 64.0 6.76e-01 92.1% 100.0%
3170398 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.72 66.0 6.24e-01 98.9% 83.8%
3788817 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.71 61.0 6.26e-01 91.0% 96.5%
3768347 4.1.1.230 beta barrels › SH3 › SH3 › SH3 › DUF7030 0.67 47.0 5.25e-01 88.8% 100.0%
2464329 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.65 50.0 4.96e-01 83.1% 95.8%
3166158 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.64 50.0 4.74e-01 83.1% 89.5%
3978255 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.63 49.0 4.68e-01 83.1% 89.5%
3949297 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.63 49.0 4.65e-01 83.1% 89.5%
3963175 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.62 53.0 4.17e-01 93.3% 88.1%
3651664 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.60 44.0 2.85e-01 76.4% 33.4%
3415164 7026.1.1.13 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.59 43.0 3.24e-01 75.3% 61.3%
4397252 3523.1.1.3 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptC 0.59 45.0 3.92e-01 82.0% 68.1%
4032202 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 47.0 3.80e-01 88.8% 55.4%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.35e-01 94.4% 68.7%
4488223 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.57 48.0 3.36e-01 95.5% 92.6%
5012011 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 46.0 4.15e-01 91.0% 64.0%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.56 44.0 4.07e-01 84.3% 84.3%
3264455 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 44.0 3.71e-01 85.4% 94.8%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.31e-01 95.5% 70.0%
3617055 5.1.13.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 0.54 45.0 3.06e-01 89.9% 64.9%
3534783 11.1.1.787 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITI_HC_C 0.54 42.0 3.16e-01 86.5% 89.8%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 44.0 3.58e-01 91.0% 77.7%
4565299 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.54 43.0 3.67e-01 86.5% 87.5%
3717986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 45.0 4.13e-01 95.5% 71.3%
3579113 10.12.1.38 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.53 41.0 3.38e-01 84.3% 93.5%
4424299 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.53 42.0 3.44e-01 84.3% 91.9%
5012521 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 45.0 3.33e-01 96.6% 100.0%
3280539 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 42.0 3.73e-01 87.6% 90.8%
4936711 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.31e-01 95.5% 91.0%
3593521 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.52 42.0 3.75e-01 87.6% 95.2%
3565627 11.1.1.787 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITI_HC_C 0.52 42.0 3.33e-01 91.0% 87.2%
3895500 6129.1.1.11 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › ITI_HC_C 0.52 42.0 3.18e-01 92.1% 92.5%
4603160 5084.5.4.4 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO 0.51 37.0 2.73e-01 75.3% 64.3%
3760943 6129.1.1.11 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › ITI_HC_C 0.51 42.0 3.27e-01 92.1% 89.5%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 4.16e-01 91.0% 97.1%
3600727 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 3.07e-01 100.0% 82.6%
3536447 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.50 38.0 3.22e-01 79.8% 54.5%
3271950 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.50 36.0 2.56e-01 76.4% 54.8%