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AP008983.1__BAE47872.1__CST174__00174

Bact-Vir

AP008983.1__BAE47872.1__CST174__00174

Identity

Accession:
AP008983 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_c-st

TaxID: 12336

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-85
PDB
Domain cluster: rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00216.27 best Bac_DNA_binding 58.2 1.10e-15 100.0% 93.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.89 83.0 7.61e-01 100.0% 82.4%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.89 83.0 7.91e-01 100.0% 87.6%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.88 82.0 7.68e-01 100.0% 89.2%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.87 81.0 7.72e-01 100.0% 88.5%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.81 75.0 7.12e-01 100.0% 87.9%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.79 74.0 7.21e-01 100.0% 91.4%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.78 71.0 6.80e-01 100.0% 92.9%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.76 66.0 6.59e-01 100.0% 90.9%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.68 62.0 5.88e-01 100.0% 89.9%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.54 46.0 3.25e-01 95.3% 86.2%
7qu8A01 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.52 45.0 3.48e-01 98.8% 74.5%
3cq9A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.52 38.0 2.87e-01 76.5% 54.0%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 28.0 2.47e-01 76.5% 31.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 36.0 3.25e-01 76.5% 72.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4227571 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.93 89.0 8.30e-01 100.0% 86.0%
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.92 87.0 8.14e-01 100.0% 85.0%
5073165 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.91 86.0 8.47e-01 100.0% 94.4%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.91 86.0 7.91e-01 100.0% 87.5%
4088528 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.91 85.0 8.01e-01 100.0% 86.0%
222497 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 84.0 7.99e-01 100.0% 86.7%
4051851 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 84.0 7.87e-01 100.0% 94.0%
4508411 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 83.0 7.79e-01 100.0% 85.0%
4662987 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.87 81.0 7.81e-01 100.0% 89.5%
4274974 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.84 77.0 7.30e-01 100.0% 85.0%
4284216 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.83 76.0 7.37e-01 100.0% 90.5%
4681823 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.83 76.0 7.23e-01 100.0% 85.0%
1916727 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.81 75.0 7.12e-01 100.0% 87.9%
4168202 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.74 67.0 6.50e-01 100.0% 96.8%
3671960 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.67 28.0 2.53e-01 74.1% 29.6%
3483174 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.58 47.0 2.99e-01 88.2% 72.9%
3685970 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 38.0 3.09e-01 74.1% 54.1%
5077779 2003.1.5.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C 0.54 44.0 3.22e-01 94.1% 86.5%