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AP008983.1__BAE47877.1__CST179__00179
Bact-VirAP008983.1__BAE47877.1__CST179__00179
Identity
- Accession:
- AP008983 ↗
- Kingdom:
- phage
Quality
91.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-184
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 24.0 | 4.55e-01 | 72.2% | 100.0% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 25.0 | 3.71e-01 | 76.7% | 94.5% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 25.0 | 3.57e-01 | 76.7% | 92.3% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 23.0 | 3.09e-01 | 73.9% | 80.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259748 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.74 | 53.0 | 4.86e-01 | 100.0% | 58.2% |
| 3795155 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.74 | 54.0 | 4.54e-01 | 100.0% | 47.1% |
| 3740962 | 3938.1.1.3 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 | 0.72 | 55.0 | 5.07e-01 | 100.0% | 63.3% |
| 3691211 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.71 | 55.0 | 4.85e-01 | 100.0% | 57.9% |
| 3689958 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.70 | 54.0 | 4.69e-01 | 100.0% | 54.5% |
| 3829878 | 3938.1.1.3 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 | 0.70 | 54.0 | 4.75e-01 | 100.0% | 56.0% |
| 3835364 | 3938.1.1.3 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 | 0.68 | 54.0 | 4.95e-01 | 100.0% | 64.4% |
| 3468824 | 3938.1.1.3 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 | 0.67 | 55.0 | 4.84e-01 | 100.0% | 62.1% |
| 3791666 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.67 | 54.0 | 4.52e-01 | 99.4% | 52.9% |
| None | — | 0.55 | 48.0 | 4.84e-01 | 89.8% | 96.0% |
D2
high
residues 360-459
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.60 | 39.0 | 3.94e-01 | 97.0% | 67.0% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 37.0 | 3.53e-01 | 96.0% | 55.2% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 32.0 | 3.40e-01 | 96.0% | 68.1% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 37.0 | 2.85e-01 | 96.0% | 30.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3321545 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 29.0 | 2.46e-01 | 94.0% | 27.9% |
| 3510780 | 568.1.1.7 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › Cmc1 | 0.54 | 38.0 | 3.91e-01 | 89.0% | 77.9% |
| 4094 | 191.1.1.16 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_12 | 0.51 | 35.0 | 3.37e-01 | 97.0% | 58.7% |
| 5018995 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.51 | 43.0 | 3.45e-01 | 97.0% | 75.0% |
| 3221766 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 36.0 | 3.58e-01 | 97.0% | 70.5% |
| 4518945 | 2006.1.3.22 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DabA | 0.50 | 39.0 | 2.58e-01 | 88.0% | 70.3% |
D3
medium
residues 185-200_235-356
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pn5A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 29.0 | 3.44e-01 | 95.7% | 83.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3321325 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.80 | 59.0 | 6.75e-01 | 100.0% | 98.1% |
| 3274175 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.79 | 60.0 | 6.74e-01 | 99.3% | 98.2% |
| 3743750 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.77 | 56.0 | 6.45e-01 | 97.8% | 98.1% |
| 3344222 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.77 | 57.0 | 6.42e-01 | 100.0% | 95.5% |
| 1780411 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.77 | 59.0 | 6.56e-01 | 99.3% | 97.3% |
| 3691213 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.76 | 57.0 | 6.50e-01 | 99.3% | 100.0% |
| 4011480 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 56.0 | 6.46e-01 | 100.0% | 100.0% |
| 3632769 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.76 | 57.0 | 6.33e-01 | 100.0% | 96.4% |
| 3623207 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 61.0 | 6.66e-01 | 100.0% | 100.0% |
| 3638494 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 60.0 | 6.60e-01 | 97.8% | 100.0% |
| 3179275 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 56.0 | 6.28e-01 | 100.0% | 97.3% |
| 3505037 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.74 | 57.0 | 6.43e-01 | 98.6% | 100.0% |
| 3728685 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.72 | 63.0 | 6.48e-01 | 98.6% | 96.9% |
| 3924672 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.70 | 60.0 | 6.30e-01 | 100.0% | 99.2% |
| 3621705 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.70 | 64.0 | 6.49e-01 | 100.0% | 97.8% |
| 3220214 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.69 | 60.0 | 6.27e-01 | 98.6% | 99.2% |
| 3690252 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.67 | 56.0 | 5.96e-01 | 98.6% | 96.8% |
| 3931707 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.66 | 62.0 | 6.32e-01 | 99.3% | 100.0% |
| 3599535 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 43.0 | 5.10e-01 | 92.8% | 100.0% |
| 4027677 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 41.0 | 4.96e-01 | 93.5% | 100.0% |
| 3206565 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.60 | 56.0 | 3.85e-01 | 98.6% | 49.9% |
D4
medium
residues 460-558
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 50.0 | 5.10e-01 | 96.0% | 92.7% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 36.0 | 4.04e-01 | 98.0% | 92.6% |
| 2i87A03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 36.0 | 3.99e-01 | 98.0% | 90.4% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 32.0 | 3.73e-01 | 100.0% | 87.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3429812 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.83 | 71.0 | 6.88e-01 | 100.0% | 81.8% |
| 4556003 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 57.0 | 6.23e-01 | 100.0% | 86.7% |
| 3665832 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.81 | 69.0 | 6.67e-01 | 100.0% | 81.8% |
| 3206565 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.77 | 70.0 | 4.46e-01 | 100.0% | 22.9% |
| 3357414 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.77 | 72.0 | 6.52e-01 | 100.0% | 83.8% |
| 3187087 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 70.0 | 6.45e-01 | 100.0% | 83.2% |
| 3643011 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 71.0 | 6.38e-01 | 100.0% | 83.8% |
| 3183266 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 71.0 | 6.36e-01 | 100.0% | 83.1% |
| 3696793 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 70.0 | 6.60e-01 | 100.0% | 85.2% |
| 3995503 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.75 | 63.0 | 6.62e-01 | 93.9% | 97.8% |
| 4887355 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.74 | 54.0 | 5.02e-01 | 100.0% | 60.5% |
| 3274137 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.74 | 69.0 | 6.33e-01 | 100.0% | 79.2% |
| 3722909 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.73 | 69.0 | 6.12e-01 | 100.0% | 83.7% |
| 5038954 | 1.1.2.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 | 0.65 | 58.0 | 5.55e-01 | 100.0% | 84.3% |
| 4585893 | 1.1.2.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung | 0.64 | 57.0 | 5.67e-01 | 100.0% | 92.4% |
| 5022140 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.62 | 56.0 | 5.21e-01 | 100.0% | 84.8% |
| 3888411 | 1.1.2.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N | 0.62 | 56.0 | 5.50e-01 | 100.0% | 93.3% |
| 3506977 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.56 | 50.0 | 4.44e-01 | 99.0% | 87.4% |
| 3587253 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 48.0 | 4.69e-01 | 97.0% | 93.6% |
| 3925828 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 44.0 | 4.48e-01 | 100.0% | 91.6% |