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AP009390.1__BAF81465.1__EFP_197__00197
Bact-VirAP009390.1__BAF81465.1__EFP_197__00197
Identity
- Accession:
- AP009390 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Kochikohdavirus›
Enterococcus_phage_EF24C
TaxID: 442493
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
rep: OP328423.1__UXQ87803.1__X__00059__D23-94
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 40.0 | 3.50e-01 | 85.5% | 40.2% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.64 | 57.0 | 4.63e-01 | 100.0% | 67.9% |
| 1cyyA02 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.63 | 58.0 | 4.68e-01 | 100.0% | 98.4% |
| 4yjmC00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.63 | 55.0 | 5.24e-01 | 98.6% | 97.6% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 51.0 | 4.26e-01 | 98.6% | 97.6% |
| 4paaA04 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.59 | 48.0 | 4.11e-01 | 92.8% | 73.5% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 52.0 | 4.37e-01 | 100.0% | 100.0% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.58 | 30.0 | 3.21e-01 | 94.2% | 54.4% |
| 2j5bB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 3.29e-01 | 85.5% | 59.4% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 4.36e-01 | 100.0% | 98.2% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.57 | 29.0 | 3.21e-01 | 94.2% | 57.4% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 50.0 | 4.66e-01 | 100.0% | 96.5% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 49.0 | 4.23e-01 | 100.0% | 99.1% |
| 3bwwA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 44.0 | 3.04e-01 | 87.0% | 41.5% |
| 6melB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 40.0 | 3.06e-01 | 73.9% | 49.0% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.56 | 46.0 | 4.29e-01 | 94.2% | 100.0% |
| 3nwgA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.56 | 50.0 | 4.39e-01 | 100.0% | 84.2% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 48.0 | 4.54e-01 | 98.6% | 94.1% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 49.0 | 4.21e-01 | 100.0% | 63.0% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.55 | 47.0 | 4.23e-01 | 100.0% | 99.0% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 48.0 | 4.16e-01 | 100.0% | 93.5% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 47.0 | 4.44e-01 | 98.6% | 96.4% |
| 2cqhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 45.0 | 4.19e-01 | 97.1% | 80.6% |
| 1g0dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.59e-01 | 100.0% | 46.0% |
| 1jllB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 42.0 | 3.27e-01 | 87.0% | 77.4% |
| 2coaA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.16e-01 | 87.0% | 44.1% |
| 3ci6B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 40.0 | 3.13e-01 | 85.5% | 75.8% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 44.0 | 4.00e-01 | 100.0% | 100.0% |
| 3aupD01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 45.0 | 3.36e-01 | 100.0% | 97.9% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.19e-01 | 100.0% | 44.4% |
| 3o2sB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 3.24e-01 | 84.1% | 64.9% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.23e-01 | 81.2% | 84.8% |
| 1t6eX01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 45.0 | 3.39e-01 | 100.0% | 98.9% |
| 1pqzA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 36.0 | 2.94e-01 | 75.4% | 99.3% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587970 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.73 | 60.0 | 4.90e-01 | 100.0% | 48.8% |
| 3728679 | 6.1.1.37 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF7908 | 0.72 | 64.0 | 5.18e-01 | 100.0% | 97.7% |
| 3486733 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.69 | 42.0 | 3.78e-01 | 85.5% | 42.9% |
| 4928000 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.67 | 47.0 | 2.91e-01 | 100.0% | 12.2% |
| 4595959 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.65 | 57.0 | 5.47e-01 | 97.1% | 100.0% |
| 4241788 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.64 | 58.0 | 4.49e-01 | 100.0% | 93.3% |
| 3484746 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.60 | 53.0 | 4.53e-01 | 97.1% | 99.1% |
| 3227424 | 331.18.1.8 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › BBS7_pf | 0.60 | 53.0 | 4.59e-01 | 98.6% | 90.5% |
| 3701279 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.59 | 52.0 | 4.70e-01 | 98.6% | 97.9% |
| 4613363 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 51.0 | 3.49e-01 | 100.0% | 35.2% |
| 4229813 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 52.0 | 3.47e-01 | 100.0% | 33.9% |
| 3940997 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 40.0 | 3.22e-01 | 85.5% | 36.3% |
| 3599933 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 50.0 | 3.21e-01 | 100.0% | 20.5% |
| 5040129 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.58 | 51.0 | 4.64e-01 | 100.0% | 89.5% |
| 3312666 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 40.0 | 4.06e-01 | 100.0% | 72.9% |
| 5025693 | 304.3.1.23 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › TiaS_FLD | 0.58 | 50.0 | 4.57e-01 | 100.0% | 95.8% |
| 5075567 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.57 | 49.0 | 4.27e-01 | 98.6% | 99.1% |
| 4978966 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.57 | 48.0 | 3.30e-01 | 94.2% | 34.8% |
| 140754 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.56 | 50.0 | 4.52e-01 | 100.0% | 90.4% |
| 4007645 | 304.146.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein yjdK › Uncharacterized protein yjdK | 0.56 | 49.0 | 4.52e-01 | 100.0% | 91.1% |
| 4222843 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 48.0 | 3.26e-01 | 100.0% | 34.8% |
| 3510741 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.55 | 44.0 | 2.71e-01 | 85.5% | 21.8% |
| 3276150 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.55 | 40.0 | 3.18e-01 | 78.3% | 88.0% |
| 4216562 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 48.0 | 4.46e-01 | 100.0% | 94.4% |
| 3251948 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.55 | 40.0 | 4.29e-01 | 76.8% | 98.3% |
| 4975146 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.55 | 40.0 | 3.33e-01 | 81.2% | 97.0% |
| 4943785 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 41.0 | 3.30e-01 | 81.2% | 95.7% |
| 5040672 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.54 | 48.0 | 4.41e-01 | 100.0% | 96.7% |
| 3566248 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 47.0 | 4.38e-01 | 100.0% | 77.8% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 45.0 | 3.07e-01 | 98.6% | 34.5% |
| 3348136 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.53 | 47.0 | 3.99e-01 | 100.0% | 67.0% |
| 3316406 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 44.0 | 3.87e-01 | 100.0% | 74.8% |
| 3320163 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.51 | 44.0 | 2.78e-01 | 100.0% | 48.0% |
| 3200064 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.51 | 41.0 | 3.49e-01 | 92.8% | 90.4% |
| 3352487 | 1.1.1.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N | 0.50 | 44.0 | 3.12e-01 | 100.0% | 82.6% |