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AP011616.1__BAK53601.1__YSP_083__00083
Bact-VirAP011616.1__BAK53601.1__YSP_083__00083
Identity
- Accession:
- AP011616 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-73
Domain cluster:
rep: NC_015937.1__YP_004782290.1__TMA_083__00083__D2-65
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20767.3 best | DUF6839 | 115.9 | 1.00e-33 | 100.0% | 95.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zdjA00 | 3.10.450.450 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.85 | 79.0 | 7.78e-01 | 100.0% | 94.1% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 53.0 | 4.39e-01 | 84.6% | 71.7% |
| 2k5tA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 47.0 | 3.89e-01 | 84.6% | 50.8% |
| 3aiiA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 51.0 | 3.37e-01 | 100.0% | 45.4% |
| 2oodA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.57 | 42.0 | 3.34e-01 | 80.0% | 84.3% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 42.0 | 4.23e-01 | 81.5% | 100.0% |
| 1sqhA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 45.0 | 3.73e-01 | 93.8% | 56.5% |
| 1nm3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 45.0 | 3.47e-01 | 93.8% | 64.2% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.54 | 41.0 | 4.27e-01 | 84.6% | 94.8% |
| 6t8iA01 | 2.60.40.1740 | Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) | 0.54 | 42.0 | 3.37e-01 | 89.2% | 92.3% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.53 | 41.0 | 3.86e-01 | 84.6% | 100.0% |
| 1m9uA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 42.0 | 3.42e-01 | 90.8% | 90.9% |
| 3ed3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 38.0 | 3.23e-01 | 81.5% | 74.4% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 34.0 | 2.02e-01 | 87.7% | 8.3% |
| 6i1cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 3.59e-01 | 95.4% | 56.5% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.50 | 37.0 | 3.46e-01 | 84.6% | 62.7% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.50 | 39.0 | 3.31e-01 | 86.2% | 97.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1003271 | 3665.1.1.1 ↗ | beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 | 0.85 | 79.0 | 7.73e-01 | 100.0% | 92.8% |
| 5037336 | 3665.1.1.1 ↗ | beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 | 0.83 | 76.0 | 7.09e-01 | 100.0% | 86.3% |
| 3285465 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.73 | 58.0 | 4.55e-01 | 86.2% | 60.7% |
| 3978632 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.70 | 54.0 | 4.31e-01 | 84.6% | 45.4% |
| 5046099 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.67 | 58.0 | 4.52e-01 | 100.0% | 58.6% |
| 4978871 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.66 | 49.0 | 3.86e-01 | 84.6% | 37.1% |
| 3953046 | 1001.1.1.4 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin_N | 0.59 | 36.0 | 3.97e-01 | 84.6% | 78.0% |
| 3223818 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.59 | 48.0 | 4.72e-01 | 90.8% | 84.3% |
| 4098699 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 43.0 | 3.68e-01 | 84.6% | 60.8% |
| 4146960 | 3264.1.1.0 ↗ | 0.58 | 49.0 | 3.71e-01 | 100.0% | 41.7% | |
| 3261111 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.56 | 43.0 | 3.45e-01 | 89.2% | 49.7% |
| 3401480 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.55 | 44.0 | 4.33e-01 | 96.9% | 84.3% |
| 3848840 | 2485.1.1.107 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF30536 | 0.55 | 44.0 | 4.11e-01 | 96.9% | 76.7% |
| 3564375 | 2485.1.1.107 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF30536 | 0.55 | 44.0 | 3.68e-01 | 96.9% | 53.1% |
| 5000379 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.55 | 43.0 | 4.29e-01 | 100.0% | 82.9% |
| 3997935 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.54 | 40.0 | 3.54e-01 | 84.6% | 81.0% |
| 4630601 | 210.1.2.7 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta | 0.53 | 37.0 | 2.47e-01 | 75.4% | 47.4% |
| 3562535 | 11.1.1.890 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26190 | 0.53 | 47.0 | 3.70e-01 | 98.5% | 91.1% |
| 3891605 | 708.1.2.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › RIG-I_C-RD | 0.53 | 40.0 | 3.35e-01 | 100.0% | 43.8% |
| 4044154 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 39.0 | 3.86e-01 | 84.6% | 75.7% |
| 3644473 | 4.1.1.295 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 | 0.51 | 30.0 | 3.10e-01 | 81.5% | 55.4% |
| 3593474 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 42.0 | 3.07e-01 | 100.0% | 81.0% |