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AP011617.1__BAK53716.1__TMA_028__00028

Bact-Vir

AP011617.1__BAK53716.1__TMA_028__00028

Identity

Accession:
AP011617 ↗
Kingdom:
phage

Quality

50.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_TMA

TaxID: 699370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-165
PDB
D2 high residues 226-315
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.69 51.0 5.17e-01 76.7% 78.7%
4wz9A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.64 45.0 3.10e-01 73.3% 21.2%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 46.0 3.91e-01 74.4% 94.4%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.61 45.0 4.39e-01 90.0% 71.9%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.60 52.0 5.07e-01 97.8% 94.0%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.60 43.0 4.23e-01 76.7% 79.2%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 4.33e-01 72.2% 94.2%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 41.0 3.72e-01 82.2% 91.3%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 3.98e-01 91.1% 94.1%
5my3A00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.52 38.0 2.99e-01 77.8% 57.8%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 41.0 3.31e-01 87.8% 89.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064030 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.79 66.0 6.47e-01 88.9% 90.5%
1566530 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.74 51.0 5.32e-01 70.0% 86.4%
4596379 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.71 50.0 5.51e-01 73.3% 97.1%
5081313 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.71 61.0 6.18e-01 92.2% 95.6%
4942022 182.1.3.3 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg 0.69 62.0 5.63e-01 100.0% 88.3%
4984330 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.69 51.0 5.11e-01 77.8% 84.4%
3337098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 4.90e-01 76.7% 93.7%
5054621 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.68 60.0 5.41e-01 100.0% 84.8%
4108750 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.66 50.0 4.56e-01 80.0% 65.8%
3266370 2007.2.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 0.61 53.0 4.30e-01 97.8% 94.9%
4226245 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.61 44.0 4.86e-01 75.6% 100.0%
4164573 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.60 41.0 3.80e-01 70.0% 80.0%
3566066 198.1.1.8 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 0.58 42.0 3.14e-01 76.7% 58.5%
3465392 109.4.1.2573 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C, DCB 0.58 40.0 2.37e-01 73.3% 14.2%
4110342 2007.2.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 0.58 50.0 4.03e-01 95.6% 98.9%
5038448 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.56 41.0 4.34e-01 84.4% 90.0%
3962984 2004.1.1.49 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.54 47.0 3.85e-01 98.9% 54.9%
4055922 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.50 40.0 2.89e-01 90.0% 79.3%
D3 high residues 319-456
PDB