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AP011617.1__BAK53729.1__TMA_041__00041

Bact-Vir

AP011617.1__BAK53729.1__TMA_041__00041

Identity

Accession:
AP011617 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_TMA

TaxID: 699370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-146
PDB
Domain cluster: rep: IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015429__D6-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12637.15 best TSCPD 63.7 2.30e-17 91.2% 80.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.70 48.0 5.47e-01 91.2% 98.8%
8p2aA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.68 48.0 5.36e-01 95.6% 96.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.66 32.0 4.25e-01 92.1% 89.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.65 47.0 5.24e-01 92.1% 96.6%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.63 45.0 4.97e-01 89.5% 94.3%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.63 52.0 4.97e-01 100.0% 76.9%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 49.0 3.85e-01 93.9% 99.2%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 49.0 4.97e-01 97.4% 98.2%
3tavA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 44.0 3.46e-01 91.2% 84.1%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 45.0 3.58e-01 92.1% 99.1%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 40.0 3.52e-01 80.7% 83.1%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 45.0 4.28e-01 100.0% 80.3%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.52e-01 100.0% 68.4%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 4.01e-01 89.5% 91.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040105 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.92 79.0 8.06e-01 98.2% 91.8%
4963032 244.2.1.15 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD 0.91 79.0 8.09e-01 98.2% 93.6%
4264655 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.89 77.0 7.18e-01 92.1% 75.6%
5042137 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.89 78.0 7.63e-01 97.4% 86.7%
5030209 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.84 77.0 7.23e-01 97.4% 91.1%
3967619 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.82 74.0 7.26e-01 94.7% 93.3%
4960403 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 36.0 4.05e-01 92.1% 62.2%
3946513 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.70 51.0 5.48e-01 97.4% 90.5%
4975980 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.63 47.0 4.85e-01 92.1% 81.8%
3415735 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.62 41.0 4.39e-01 81.6% 78.9%
4998626 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.61 39.0 4.61e-01 95.6% 98.7%
None — 0.61 39.0 4.40e-01 82.5% 87.1%
3390942 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 42.0 4.27e-01 78.9% 74.5%
3168846 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 42.0 4.30e-01 83.3% 75.5%
3424562 304.107.1.8 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › AAA_assoc 0.59 31.0 3.00e-01 88.6% 44.8%
4457263 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.59 31.0 4.04e-01 78.9% 93.7%
3626566 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 41.0 4.12e-01 83.3% 71.3%
3698130 216.1.1.14 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med1 0.58 41.0 4.27e-01 82.5% 80.0%
4097801 3518.1.1.0 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex 0.56 49.0 4.38e-01 99.1% 99.4%
3224158 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.54 36.0 4.07e-01 97.4% 90.6%
4935472 330.4.1.0 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.53 31.0 3.75e-01 78.9% 91.4%
3406351 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 28.0 2.90e-01 97.4% 51.8%
3935332 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 28.0 2.68e-01 97.4% 43.1%