←Back to structures
AP011617.1__BAK53731.1__TMA_043__00043
Bact-VirAP011617.1__BAK53731.1__TMA_043__00043
Identity
- Accession:
- AP011617 ↗
- Kingdom:
- phage
Quality
66.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 61-118
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.75 | 42.0 | 2.90e-01 | 72.4% | 18.6% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 53.0 | 5.33e-01 | 77.6% | 96.6% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.70 | 49.0 | 3.79e-01 | 74.1% | 52.0% |
| 1uj8A00 | 1.10.10.600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like | 0.69 | 46.0 | 4.26e-01 | 72.4% | 54.8% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.68 | 58.0 | 3.88e-01 | 94.8% | 60.2% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 51.0 | 3.93e-01 | 82.8% | 41.1% |
| 3tedA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 44.0 | 3.64e-01 | 82.8% | 100.0% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 43.0 | 3.74e-01 | 86.2% | 92.9% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 40.0 | 3.63e-01 | 75.9% | 63.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 42.0 | 4.01e-01 | 84.5% | 100.0% |
| 2zshB00 | 1.10.10.1290 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transcriptional regulator DELLA, N-terminal domain | 0.53 | 39.0 | 3.88e-01 | 75.9% | 76.3% |
| 2x49A01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 38.0 | 3.31e-01 | 81.0% | 94.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4317001 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.79 | 60.0 | 3.64e-01 | 81.0% | 62.1% |
| 3940154 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.76 | 60.0 | 3.58e-01 | 84.5% | 66.9% |
| 3068777 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.70 | 58.0 | 3.95e-01 | 93.1% | 50.7% |
| 3710673 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.69 | 56.0 | 3.64e-01 | 89.7% | 44.0% |
| 5020278 | 3012.1.1.19 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 | 0.69 | 47.0 | 3.73e-01 | 70.7% | 60.0% |
| 1395085 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.68 | 58.0 | 3.88e-01 | 94.8% | 59.5% |
| 3702748 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 49.0 | 4.84e-01 | 79.3% | 73.3% |
| 3965856 | 107.1.1.13 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like | 0.67 | 57.0 | 3.89e-01 | 96.6% | 40.0% |
| 4963772 | 107.1.1.13 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like | 0.67 | 57.0 | 3.91e-01 | 96.6% | 46.2% |
| 5021128 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.66 | 49.0 | 3.87e-01 | 81.0% | 37.6% |
| 3953673 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.65 | 52.0 | 3.11e-01 | 87.9% | 36.9% |
| None | — | 0.63 | 43.0 | 2.64e-01 | 70.7% | 12.4% | |
| 4947232 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.60 | 41.0 | 3.76e-01 | 72.4% | 53.8% |
| None | — | 0.60 | 44.0 | 3.60e-01 | 77.6% | 42.9% | |
| 5079028 | 2006.1.4.36 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 | 0.58 | 43.0 | 3.30e-01 | 81.0% | 75.2% |
| 3669436 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.58 | 42.0 | 3.75e-01 | 77.6% | 100.0% |
| 3735395 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.57 | 43.0 | 2.74e-01 | 84.5% | 32.0% |
| 5031192 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.57 | 43.0 | 3.84e-01 | 86.2% | 88.9% |
| 4565026 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.54 | 40.0 | 3.72e-01 | 81.0% | 80.0% |
| 3973900 | 192.8.1.331 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF4824 | 0.53 | 41.0 | 3.57e-01 | 91.4% | 56.5% |