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AP011617.1__BAK53733.1__TMA_045__00045

Bact-Vir

AP011617.1__BAK53733.1__TMA_045__00045

Identity

Accession:
AP011617 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_TMA

TaxID: 699370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: OQ331036.1__WCZ66216.1__X__00052__D4-76
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.67 59.0 4.59e-01 100.0% 81.8%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 4.20e-01 88.2% 90.3%
2o5vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 52.0 3.77e-01 86.8% 44.8%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 47.0 2.98e-01 76.5% 17.8%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 53.0 4.13e-01 88.2% 79.4%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.64 46.0 4.09e-01 76.5% 59.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 45.0 3.33e-01 75.0% 37.9%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 4.20e-01 92.6% 85.5%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 4.17e-01 92.6% 85.6%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.21e-01 94.1% 84.9%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 4.14e-01 92.6% 85.8%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 50.0 3.48e-01 88.2% 71.3%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 4.03e-01 92.6% 81.1%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 48.0 4.28e-01 86.8% 62.6%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 4.18e-01 94.1% 88.1%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.56e-01 100.0% 83.5%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.97e-01 92.6% 80.1%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 4.07e-01 92.6% 85.5%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.09e-01 94.1% 85.0%
7ccbA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 49.0 3.78e-01 88.2% 75.9%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 3.70e-01 88.2% 96.7%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.52e-01 92.6% 57.4%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.59 49.0 4.13e-01 98.5% 91.4%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.46e-01 98.5% 86.0%
1ms5B02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.36e-01 92.6% 50.0%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.19e-01 86.8% 74.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.58 50.0 4.16e-01 98.5% 74.4%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.08e-01 100.0% 84.7%
7c8fA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.27e-01 92.6% 64.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.57 47.0 3.08e-01 100.0% 20.3%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.19e-01 92.6% 63.1%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.22e-01 92.6% 58.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.57 42.0 3.18e-01 82.4% 66.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 47.0 3.13e-01 98.5% 92.2%
7u6rA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.55 46.0 3.09e-01 92.6% 57.1%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.54 43.0 3.76e-01 100.0% 56.7%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 2.90e-01 100.0% 27.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2639349 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.74 50.0 4.11e-01 76.5% 39.0%
3594422 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 60.0 4.48e-01 100.0% 85.7%
3213192 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 54.0 3.24e-01 86.8% 76.5%
4641125 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.68 55.0 3.40e-01 86.8% 63.1%
4049335 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.66 54.0 3.31e-01 86.8% 73.4%
3911275 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.66 53.0 3.26e-01 86.8% 64.6%
3416429 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.66 52.0 3.24e-01 86.8% 66.0%
5001360 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 52.0 3.26e-01 86.8% 64.9%
4940485 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 56.0 4.69e-01 100.0% 90.4%
3386489 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.64 57.0 4.29e-01 100.0% 64.7%
3301602 5.1.2.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.64 55.0 4.13e-01 100.0% 38.3%
4488171 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 52.0 3.23e-01 86.8% 74.6%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.64 57.0 4.13e-01 100.0% 63.8%
4073461 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.63 54.0 3.97e-01 97.1% 62.6%
5043894 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 54.0 3.94e-01 92.6% 59.4%
3676209 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 52.0 3.83e-01 92.6% 82.3%
3822766 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 52.0 3.93e-01 92.6% 76.2%
3667884 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 52.0 3.60e-01 92.6% 82.3%
3463325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 51.0 3.43e-01 92.6% 93.3%
3243588 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 52.0 3.42e-01 100.0% 32.6%
5068490 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 49.0 3.58e-01 88.2% 57.8%
4873201 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.60 49.0 3.34e-01 88.2% 67.5%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 49.0 3.77e-01 94.1% 77.0%
4506613 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 51.0 3.70e-01 92.6% 67.2%
5072456 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.59 46.0 2.97e-01 100.0% 17.8%
3215907 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.36e-01 97.1% 33.3%
3740622 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.59 44.0 2.78e-01 79.4% 16.3%
3927790 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 34.0 3.88e-01 70.6% 82.2%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.59 52.0 4.32e-01 100.0% 80.0%
5068365 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.58 50.0 3.66e-01 92.6% 68.0%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.58 50.0 4.16e-01 98.5% 74.4%
4991701 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 3.23e-01 85.3% 74.9%
5048388 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.57 48.0 3.95e-01 91.2% 79.2%
3501377 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 3.52e-01 92.6% 36.3%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 46.0 3.21e-01 97.1% 28.6%
4987737 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.56 49.0 3.18e-01 100.0% 32.1%
3257853 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 46.0 3.12e-01 98.5% 89.8%
3426676 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 47.0 3.02e-01 98.5% 89.3%
3609404 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.55 49.0 3.03e-01 100.0% 21.3%
3427945 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 45.0 4.06e-01 100.0% 77.0%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 45.0 4.01e-01 100.0% 77.0%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 45.0 2.85e-01 100.0% 46.9%
3883276 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 42.0 2.78e-01 97.1% 46.3%