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AP011617.1__BAK53757.1__TMA_069__00069
Bact-VirAP011617.1__BAK53757.1__TMA_069__00069
Identity
- Accession:
- AP011617 ↗
- Kingdom:
- phage
Quality
64.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-188
Domain cluster:
rep: IMGVR_UViG_3300048645_000386-3300048645-Ga0496646_0001782_1060_1725__D34-89_127-196
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.80 | 56.0 | 6.36e-01 | 100.0% | 94.1% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.79 | 62.0 | 6.70e-01 | 98.7% | 96.9% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.77 | 61.0 | 6.61e-01 | 99.4% | 98.4% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.76 | 61.0 | 6.44e-01 | 100.0% | 94.9% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.75 | 44.0 | 5.39e-01 | 100.0% | 89.9% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.73 | 68.0 | 6.12e-01 | 100.0% | 79.0% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.71 | 58.0 | 6.12e-01 | 100.0% | 95.7% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.70 | 34.0 | 4.38e-01 | 83.2% | 78.9% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.68 | 31.0 | 3.25e-01 | 96.1% | 44.6% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.63 | 33.0 | 4.08e-01 | 96.8% | 80.9% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 34.0 | 4.26e-01 | 93.5% | 86.3% |
| 5aj3F00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.61 | 32.0 | 3.60e-01 | 83.9% | 64.2% |
| 3igqC00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.60 | 41.0 | 3.89e-01 | 92.3% | 58.2% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 3.97e-01 | 92.9% | 84.9% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 51.0 | 4.18e-01 | 98.7% | 84.3% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.56 | 48.0 | 3.74e-01 | 94.2% | 45.2% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 34.0 | 3.68e-01 | 92.3% | 70.1% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 50.0 | 4.53e-01 | 98.1% | 99.5% |
| 3cfuA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.94e-01 | 85.2% | 75.7% |
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 36.0 | 3.99e-01 | 94.8% | 83.7% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.55 | 28.0 | 3.61e-01 | 99.4% | 89.2% |
| 2cjaA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 49.0 | 3.91e-01 | 100.0% | 77.8% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 33.0 | 3.28e-01 | 99.4% | 56.0% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 30.0 | 3.58e-01 | 85.8% | 81.4% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 49.0 | 3.74e-01 | 100.0% | 81.6% |
| 4fkeA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.53 | 39.0 | 3.47e-01 | 93.5% | 53.6% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 37.0 | 3.74e-01 | 96.8% | 71.1% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 43.0 | 3.22e-01 | 89.7% | 90.5% |
| 1lmiA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.93e-01 | 93.5% | 85.5% |
| 2ddzE00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 43.0 | 3.99e-01 | 88.4% | 84.2% |
| 1j5wB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 45.0 | 4.22e-01 | 100.0% | 91.5% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 33.0 | 3.57e-01 | 87.1% | 77.1% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 4.04e-01 | 92.3% | 80.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957584 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.82 | 58.0 | 6.65e-01 | 98.7% | 96.5% |
| 5040945 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.81 | 70.0 | 7.14e-01 | 100.0% | 92.7% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.76 | 61.0 | 6.47e-01 | 100.0% | 96.3% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.76 | 64.0 | 6.74e-01 | 100.0% | 98.6% |
| 364035 | 304.124.1.1 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U | 0.76 | 61.0 | 6.50e-01 | 99.4% | 97.7% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.75 | 64.0 | 6.62e-01 | 99.4% | 95.2% |
| 4988097 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.75 | 59.0 | 6.39e-01 | 98.7% | 96.2% |
| 3948250 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.75 | 65.0 | 6.59e-01 | 100.0% | 92.3% |
| 5083619 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.72 | 60.0 | 6.26e-01 | 99.4% | 95.1% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.72 | 49.0 | 5.55e-01 | 99.4% | 91.3% |
| 3375534 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 40.0 | 4.45e-01 | 86.5% | 69.6% |
| 5083880 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.70 | 60.0 | 6.24e-01 | 100.0% | 98.6% |
| 3177367 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.69 | 36.0 | 3.66e-01 | 95.5% | 50.3% |
| 3680821 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.68 | 39.0 | 3.99e-01 | 87.7% | 57.5% |
| 3344799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 39.0 | 4.10e-01 | 71.0% | 62.1% |
| 4613758 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.67 | 37.0 | 4.35e-01 | 97.4% | 75.2% |
| 3250999 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.67 | 36.0 | 4.02e-01 | 95.5% | 64.8% |
| 4136515 | 310.3.1.23 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 | 0.65 | 49.0 | 4.89e-01 | 99.4% | 76.2% |
| 5034752 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.63 | 45.0 | 4.24e-01 | 100.0% | 61.2% |
| 3424042 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.61 | 37.0 | 3.71e-01 | 88.4% | 56.9% |
| 3734648 | 11.1.1.668 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_M | 0.60 | 40.0 | 4.16e-01 | 87.7% | 70.5% |
| 3224953 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.60 | 41.0 | 3.62e-01 | 90.3% | 47.4% |
| 3935811 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.59 | 54.0 | 4.19e-01 | 100.0% | 83.3% |
| 2986050 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.58 | 35.0 | 3.82e-01 | 95.5% | 69.5% |
| 3750856 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 54.0 | 4.22e-01 | 100.0% | 85.0% |
| 3385898 | 7503.1.1.1 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG | 0.58 | 41.0 | 4.16e-01 | 100.0% | 72.9% |
| 3498865 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 52.0 | 4.11e-01 | 99.4% | 84.3% |
| 3927685 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.58 | 40.0 | 3.44e-01 | 93.5% | 47.0% |
| 5044753 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.57 | 43.0 | 4.65e-01 | 97.4% | 92.3% |
| 4975009 | 11.4.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 | 0.57 | 36.0 | 4.10e-01 | 84.5% | 82.5% |
| 3329978 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 38.0 | 4.04e-01 | 85.8% | 76.3% |
| 3969233 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.56 | 41.0 | 4.57e-01 | 98.1% | 94.4% |
| 3388283 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.56 | 35.0 | 3.58e-01 | 100.0% | 62.6% |
| 1070223 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.55 | 34.0 | 3.68e-01 | 92.3% | 70.1% |
| 147643 | 522.1.1.1 ↗ | a+b two layers › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › BChl_A | 0.55 | 48.0 | 3.68e-01 | 94.2% | 46.9% |
| 3707804 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.53 | 40.0 | 4.03e-01 | 90.3% | 76.9% |
| 3699878 | 12.1.1.94 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 | 0.51 | 38.0 | 4.26e-01 | 87.1% | 96.8% |
| 5047935 | 12.1.1.94 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 | 0.51 | 42.0 | 4.39e-01 | 97.4% | 93.1% |
| 5012886 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.51 | 37.0 | 4.10e-01 | 96.8% | 92.8% |
| 3293799 | 243.1.1.24 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ARC6-like_IMS | 0.51 | 33.0 | 3.44e-01 | 100.0% | 68.0% |
| 4193641 | 11.4.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF1942 | 0.50 | 36.0 | 3.81e-01 | 92.3% | 83.6% |
| 4029699 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 32.0 | 3.43e-01 | 100.0% | 72.3% |
| 3474773 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.50 | 39.0 | 4.20e-01 | 97.4% | 96.2% |