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AP011617.1__BAK53776.1__TMA_088__00088

Bact-Vir

AP011617.1__BAK53776.1__TMA_088__00088

Identity

Accession:
AP011617 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_TMA

TaxID: 699370

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-159
PDB
Domain cluster: rep: OP753453.1__WAB24442.1__X__00067__D80-189
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.78 70.0 7.01e-01 100.0% 95.4%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 54.0 6.11e-01 98.1% 98.8%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 65.0 6.64e-01 100.0% 98.1%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 60.0 6.45e-01 99.1% 100.0%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.69 51.0 5.69e-01 100.0% 100.0%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.68 50.0 5.29e-01 99.1% 86.5%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.67 51.0 5.49e-01 100.0% 94.6%
3m3gA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.67 60.0 5.80e-01 96.3% 94.2%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.64 55.0 5.80e-01 98.1% 100.0%
1hd5A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.64 57.0 4.60e-01 98.1% 88.8%
1f53A00 2.60.20.30 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.63 33.0 3.68e-01 100.0% 63.1%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 31.0 3.32e-01 100.0% 54.1%
1y5lA02 3.40.50.12440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 56.0 3.14e-01 100.0% 12.2%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.61 50.0 5.17e-01 100.0% 96.1%
2e7zA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 54.0 4.69e-01 98.1% 83.9%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 49.0 5.21e-01 95.4% 100.0%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 54.0 5.30e-01 97.2% 100.0%
1ogyA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 52.0 4.98e-01 96.3% 94.3%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 53.0 5.05e-01 99.1% 87.2%
4iykA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.57 33.0 3.58e-01 92.6% 66.3%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.57 41.0 4.33e-01 100.0% 87.1%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 42.0 4.58e-01 99.1% 100.0%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 50.0 4.41e-01 98.1% 81.1%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 40.0 4.39e-01 100.0% 100.0%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 33.0 3.36e-01 100.0% 61.5%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.47e-01 96.3% 77.6%
7a4aA01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.73e-01 98.1% 86.7%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.69e-01 98.1% 80.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4623574 1.1.2.13 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › 3D 0.81 66.0 6.89e-01 99.1% 93.0%
5083293 1.1.2.13 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › 3D 0.80 66.0 6.74e-01 100.0% 90.5%
3277741 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.78 67.0 6.57e-01 100.0% 85.2%
349867 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.77 69.0 6.88e-01 100.0% 92.0%
3010131 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.77 68.0 6.84e-01 100.0% 94.4%
1567466 1.1.2.13 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › 3D 0.75 62.0 5.59e-01 92.6% 65.1%
4963913 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 52.0 5.98e-01 98.1% 97.5%
3265817 1.1.2.33 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF29515 0.74 70.0 6.87e-01 100.0% 93.9%
4991006 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 54.0 5.98e-01 100.0% 96.5%
4370157 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.72 62.0 5.61e-01 100.0% 69.2%
3274054 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 65.0 6.30e-01 100.0% 87.5%
3720989 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 65.0 6.51e-01 99.1% 95.5%
4299713 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 65.0 6.61e-01 100.0% 100.0%
4931749 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 53.0 5.85e-01 98.1% 97.6%
4445483 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.71 52.0 5.85e-01 98.1% 97.6%
3726745 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 64.0 6.52e-01 99.1% 100.0%
5054391 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 52.0 5.81e-01 99.1% 97.6%
5076554 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.71 50.0 5.76e-01 96.3% 98.8%
4981335 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 52.0 5.82e-01 98.1% 98.8%
4970875 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 52.0 5.76e-01 99.1% 97.6%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 53.0 5.77e-01 100.0% 95.6%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 51.0 5.70e-01 98.1% 97.6%
4115281 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 65.0 6.32e-01 100.0% 99.2%
5076635 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 52.0 5.77e-01 99.1% 98.8%
4526788 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.70 50.0 5.68e-01 96.3% 100.0%
4200720 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 51.0 5.75e-01 98.1% 97.6%
3412967 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.69 54.0 5.87e-01 98.1% 98.9%
5041263 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 51.0 5.65e-01 98.1% 97.6%
4941448 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 51.0 5.62e-01 98.1% 97.6%
4122341 1.1.2.25 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Glyco_hydro_75 0.69 62.0 4.91e-01 100.0% 64.3%
4970929 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 51.0 5.66e-01 99.1% 98.8%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 51.0 5.66e-01 98.1% 98.8%
4670243 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 56.0 5.85e-01 100.0% 96.0%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 50.0 5.49e-01 100.0% 94.3%
4097451 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.68 51.0 5.70e-01 99.1% 100.0%
3391397 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 51.0 5.52e-01 100.0% 95.6%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.68 52.0 5.60e-01 100.0% 96.7%
4938514 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 49.0 5.45e-01 96.3% 96.5%
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 50.0 5.18e-01 99.1% 84.0%
5060218 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 50.0 5.57e-01 97.2% 100.0%
5001338 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.67 52.0 5.52e-01 100.0% 93.7%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 52.0 5.45e-01 99.1% 90.0%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.65 53.0 5.62e-01 99.1% 98.9%
4995426 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.64 53.0 5.26e-01 98.1% 84.5%
3735360 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 56.0 5.65e-01 100.0% 94.5%
3169042 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 50.0 5.24e-01 99.1% 90.0%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 55.0 5.66e-01 100.0% 96.2%
4949173 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.64 46.0 4.79e-01 93.5% 80.8%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.64 53.0 3.79e-01 100.0% 31.5%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.64 52.0 5.32e-01 100.0% 91.4%
4954217 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.62 57.0 5.05e-01 99.1% 74.7%
3688059 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 56.0 4.86e-01 100.0% 77.6%
3789369 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 50.0 5.23e-01 100.0% 96.0%
2776332 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 54.0 5.06e-01 97.2% 84.0%
3804239 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 34.0 3.61e-01 93.5% 62.1%
4023557 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.59 54.0 4.84e-01 98.1% 84.1%
5045656 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.58 53.0 4.93e-01 98.1% 88.0%
4992324 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.58 52.0 4.28e-01 98.1% 86.3%
3352481 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.57 53.0 4.77e-01 100.0% 85.5%
4340143 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 26.0 3.18e-01 70.4% 65.2%
198983 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.57 51.0 4.55e-01 98.1% 84.9%
3684407 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.56 50.0 4.41e-01 100.0% 77.0%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.53 38.0 3.64e-01 100.0% 64.0%
3900729 221.1.1.176 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 0.51 33.0 3.70e-01 100.0% 88.7%
2426588 10.32.1.262 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Golvesin_C 0.51 35.0 3.24e-01 100.0% 54.3%
3743717 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.50 38.0 2.97e-01 100.0% 37.0%