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AP011617.1__BAK53797.1__TMA_109__00109
Bact-VirAP011617.1__BAK53797.1__TMA_109__00109
Identity
- Accession:
- AP011617 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-128
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.69 | 41.0 | 4.32e-01 | 86.6% | 65.2% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 34.0 | 3.51e-01 | 92.9% | 54.8% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.61 | 40.0 | 4.33e-01 | 93.7% | 78.7% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 39.0 | 4.09e-01 | 92.1% | 73.9% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 32.0 | 3.06e-01 | 96.9% | 45.3% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.57 | 41.0 | 4.65e-01 | 89.8% | 100.0% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.57 | 35.0 | 3.55e-01 | 96.9% | 61.6% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 42.0 | 3.48e-01 | 96.1% | 46.1% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.56 | 44.0 | 4.31e-01 | 94.5% | 75.4% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.55 | 36.0 | 4.22e-01 | 93.7% | 97.6% |
| 4e6fA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.55 | 36.0 | 3.28e-01 | 81.9% | 48.5% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 30.0 | 3.84e-01 | 98.4% | 94.4% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 41.0 | 3.79e-01 | 97.6% | 63.0% |
| 4meeA00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.53 | 48.0 | 3.59e-01 | 97.6% | 90.4% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.52 | 36.0 | 3.99e-01 | 92.9% | 89.9% |
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.52 | 46.0 | 3.39e-01 | 96.9% | 97.9% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.52 | 40.0 | 4.37e-01 | 85.8% | 100.0% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 37.0 | 3.46e-01 | 89.0% | 59.0% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.51 | 42.0 | 4.07e-01 | 89.0% | 76.7% |
| 3rqwA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 35.0 | 3.15e-01 | 71.7% | 93.2% |
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 36.0 | 3.77e-01 | 99.2% | 78.3% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 45.0 | 4.25e-01 | 94.5% | 98.0% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 38.0 | 3.69e-01 | 85.8% | 68.9% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.50 | 45.0 | 3.18e-01 | 98.4% | 99.7% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062234 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.71 | 42.0 | 4.36e-01 | 86.6% | 61.7% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.67 | 39.0 | 3.55e-01 | 100.0% | 42.9% |
| 5069097 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.66 | 41.0 | 4.21e-01 | 87.4% | 65.0% |
| 3601845 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 52.0 | 4.28e-01 | 94.5% | 47.5% |
| 5068217 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.62 | 39.0 | 4.49e-01 | 92.1% | 85.3% |
| 3461175 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 43.0 | 4.86e-01 | 79.5% | 100.0% |
| 5069076 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.59 | 31.0 | 3.19e-01 | 99.2% | 53.3% |
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.59 | 37.0 | 3.61e-01 | 99.2% | 57.1% |
| 4305692 | 5084.1.1.34 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 | 0.59 | 53.0 | 4.72e-01 | 94.5% | 95.9% |
| 5013086 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 52.0 | 4.38e-01 | 97.6% | 90.2% |
| 4265077 | 5084.1.1.34 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 | 0.58 | 52.0 | 4.77e-01 | 96.1% | 95.6% |
| 4527549 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.57 | 52.0 | 3.74e-01 | 96.9% | 94.8% |
| 3244502 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.57 | 44.0 | 3.60e-01 | 98.4% | 45.9% |
| 5796 | 504.1.1.2 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › DUF1149 | 0.57 | 35.0 | 3.56e-01 | 96.9% | 62.1% |
| 4339977 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.57 | 51.0 | 3.60e-01 | 96.9% | 94.8% |
| 3414503 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.56 | 50.0 | 4.70e-01 | 99.2% | 98.1% |
| 3797730 | 271.1.1.0 ↗ | beta barrels › GFP-like › GFP-like › GFP-like | 0.55 | 41.0 | 3.42e-01 | 99.2% | 44.5% |
| 5030898 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.55 | 30.0 | 3.07e-01 | 96.9% | 53.3% |
| 4150627 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.54 | 49.0 | 3.69e-01 | 98.4% | 89.6% |
| 4010029 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.54 | 49.0 | 3.68e-01 | 99.2% | 86.9% |
| 3879988 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 46.0 | 3.87e-01 | 92.1% | 62.3% |
| 5036836 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 49.0 | 3.99e-01 | 99.2% | 85.7% |
| 4606189 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.53 | 48.0 | 3.41e-01 | 97.6% | 98.1% |
| 1294369 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 48.0 | 3.59e-01 | 97.6% | 90.4% |
| 4480962 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 47.0 | 3.59e-01 | 97.6% | 88.0% |
| 3967388 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 48.0 | 3.58e-01 | 99.2% | 87.9% |
| 4521584 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 47.0 | 3.55e-01 | 98.4% | 86.8% |
| 3386238 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 47.0 | 3.50e-01 | 96.9% | 80.9% |
| 4683047 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.53 | 45.0 | 4.16e-01 | 92.9% | 93.3% |
| 4345340 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 47.0 | 3.57e-01 | 96.9% | 90.6% |
| 4437932 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 48.0 | 3.52e-01 | 98.4% | 83.3% |
| 4603160 | 5084.5.4.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO | 0.53 | 48.0 | 3.86e-01 | 97.6% | 100.0% |
| 5034787 | 5084.5.3.17 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › DUF5916 | 0.53 | 47.0 | 3.15e-01 | 95.3% | 99.8% |
| 5010189 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 40.0 | 3.89e-01 | 89.0% | 72.7% |
| 3385752 | 5084.5.4.7 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF2860 | 0.52 | 46.0 | 3.56e-01 | 96.9% | 95.2% |
| 145377 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.52 | 47.0 | 4.40e-01 | 95.3% | 94.7% |
| 386453 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.52 | 43.0 | 4.02e-01 | 98.4% | 70.6% |
| 382272 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.52 | 47.0 | 3.48e-01 | 97.6% | 87.3% |
| 4356082 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.52 | 47.0 | 3.48e-01 | 99.2% | 86.7% |
| 4636176 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.52 | 46.0 | 3.49e-01 | 98.4% | 89.6% |
| 4950572 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.52 | 40.0 | 4.36e-01 | 85.0% | 98.1% |
| 4643284 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.52 | 46.0 | 3.50e-01 | 98.4% | 86.6% |
| 4677412 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.52 | 46.0 | 3.46e-01 | 98.4% | 87.4% |
| 4038477 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.52 | 46.0 | 3.43e-01 | 96.1% | 84.4% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.45e-01 | 99.2% | 86.2% |
| 3838722 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.51 | 45.0 | 3.43e-01 | 96.9% | 85.7% |
| 3385673 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.51 | 45.0 | 4.14e-01 | 93.7% | 90.6% |
| 3280926 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.51 | 43.0 | 3.89e-01 | 96.1% | 64.9% |
| 4450761 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 45.0 | 3.36e-01 | 97.6% | 83.7% |
| 4677413 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.51 | 45.0 | 3.42e-01 | 97.6% | 85.9% |
| 4069053 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.51 | 45.0 | 3.38e-01 | 96.9% | 96.6% |
| 4136508 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.41e-01 | 99.2% | 89.4% |
| 4669372 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.48e-01 | 99.2% | 87.4% |
| 4347483 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.34e-01 | 98.4% | 75.5% |
| 4339003 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.51e-01 | 99.2% | 89.3% |
| 3724576 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.51 | 45.0 | 4.61e-01 | 93.7% | 100.0% |
| 4191031 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.51 | 46.0 | 3.46e-01 | 98.4% | 85.5% |
| 4278291 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 45.0 | 3.40e-01 | 96.9% | 87.5% |
| 4318781 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.51 | 45.0 | 3.41e-01 | 98.4% | 89.6% |
| 4279828 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.51 | 36.0 | 3.26e-01 | 96.9% | 54.7% |
| 3613979 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.51 | 44.0 | 3.79e-01 | 96.1% | 81.5% |
| 4927927 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.51 | 29.0 | 3.09e-01 | 89.0% | 62.7% |
| 4602917 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.50 | 45.0 | 3.37e-01 | 98.4% | 81.8% |
| 6333 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.50 | 38.0 | 3.65e-01 | 85.0% | 68.7% |
| 3941948 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.50 | 46.0 | 3.44e-01 | 100.0% | 99.0% |
| 5002938 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.50 | 44.0 | 3.81e-01 | 96.9% | 94.5% |
| 4304754 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.50 | 44.0 | 3.36e-01 | 96.9% | 87.5% |
| 3263625 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.50 | 43.0 | 4.01e-01 | 96.1% | 93.3% |