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AP013057.1__BAN16863.1__X__00053

Bact-Vir

AP013057.1__BAN16863.1__X__00053

Identity

Accession:
AP013057 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yokohamavirus› Edwardsiella_phage_PEi21

TaxID: 1325372

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.86 78.0 5.48e-01 100.0% 39.0%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 77.0 6.02e-01 100.0% 56.7%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 76.0 5.80e-01 100.0% 53.4%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 74.0 5.78e-01 100.0% 54.9%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 74.0 5.18e-01 100.0% 41.7%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 73.0 5.73e-01 100.0% 55.3%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 73.0 5.77e-01 100.0% 53.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 71.0 5.59e-01 100.0% 54.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 72.0 5.53e-01 100.0% 56.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 71.0 5.06e-01 100.0% 40.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 62.0 5.01e-01 100.0% 59.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 54.0 3.54e-01 100.0% 36.6%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 57.0 3.81e-01 100.0% 27.1%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 49.0 3.41e-01 100.0% 23.7%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 34.0 3.99e-01 71.2% 88.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 51.0 3.47e-01 100.0% 26.6%
1u6lA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 43.0 3.49e-01 83.1% 38.9%
4j6oA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 44.0 3.01e-01 94.9% 89.7%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 39.0 2.36e-01 76.3% 16.2%
4rfbA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.69e-01 86.4% 61.3%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.96e-01 96.6% 90.2%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.08e-01 84.7% 48.1%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 46.0 3.22e-01 100.0% 78.9%
5fl4A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 37.0 2.53e-01 78.0% 49.8%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 36.0 2.79e-01 74.6% 38.3%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 41.0 2.37e-01 89.8% 12.3%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 43.0 3.66e-01 100.0% 88.0%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.51 33.0 2.41e-01 72.9% 21.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.87e-01 100.0% 84.2%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.59e-01 98.3% 87.0%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.65e-01 98.3% 93.2%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.98e-01 100.0% 41.0%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 34.0 2.63e-01 72.9% 44.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4251800 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.84 77.0 5.83e-01 100.0% 50.8%
4050655 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.84 77.0 5.83e-01 100.0% 52.3%
4480621 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 75.0 5.90e-01 100.0% 55.8%
4407599 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 75.0 5.81e-01 100.0% 55.2%
3015241 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 75.0 5.88e-01 100.0% 56.3%
4194202 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.83 75.0 5.81e-01 100.0% 55.2%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.82 75.0 5.86e-01 100.0% 56.7%
4876748 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 74.0 5.77e-01 100.0% 54.0%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.82 75.0 5.87e-01 100.0% 54.2%
4591776 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.82 75.0 5.71e-01 100.0% 53.1%
2476832 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 74.0 5.59e-01 100.0% 55.6%
4460376 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.81 74.0 5.76e-01 100.0% 52.5%
158230 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 73.0 5.63e-01 100.0% 58.3%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 73.0 5.70e-01 100.0% 55.4%
4860663 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 73.0 5.45e-01 100.0% 48.6%
4995742 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 74.0 5.90e-01 100.0% 55.5%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 72.0 5.69e-01 100.0% 58.3%
3387600 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 5.61e-01 100.0% 56.7%
4995743 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 72.0 5.61e-01 100.0% 52.5%
4234515 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 68.0 5.44e-01 100.0% 58.3%
4646871 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 56.0 4.48e-01 100.0% 69.6%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 53.0 4.35e-01 100.0% 77.5%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.61 52.0 4.09e-01 100.0% 53.0%
3213778 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 43.0 2.88e-01 79.7% 73.5%
5066808 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 46.0 3.67e-01 89.8% 55.3%
3742353 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.56 43.0 2.95e-01 84.7% 97.8%
3930707 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.56 42.0 2.70e-01 84.7% 44.0%
5051689 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.56 45.0 3.73e-01 100.0% 54.4%
4140752 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 37.0 4.01e-01 74.6% 86.0%
4184400 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 38.0 3.06e-01 76.3% 63.1%
4317475 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.53 36.0 3.34e-01 72.9% 95.0%
3199696 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 43.0 3.67e-01 96.6% 88.6%
3756160 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.52 43.0 3.37e-01 98.3% 58.6%
3591823 59.1.1.4 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 0.52 41.0 3.45e-01 89.8% 56.0%
3483861 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.51 36.0 3.24e-01 81.4% 52.5%
3267918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.76e-01 79.7% 81.8%
3613385 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.51 41.0 3.31e-01 93.2% 66.4%
4410774 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 43.0 3.57e-01 100.0% 56.5%
3402932 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.50 34.0 3.53e-01 74.6% 78.2%
3385974 7541.1.1.0 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins 0.50 39.0 3.11e-01 88.1% 45.4%