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AP014629.1__BAP28919.1__X__00048
Bact-VirAP014629.1__BAP28919.1__X__00048
Identity
- Accession:
- AP014629 ↗
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Taxonomy
TaxID: 1537091
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-118
Domain cluster:
rep: MT006234.1__QIG78055.1__BRUR0010001c01_00024__00024__D3-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04404.18 best | ERF | 57.1 | 3.10e-15 | 99.1% | 73.2% |
D2
high
residues 148-195
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fymA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 60.0 | 5.16e-01 | 95.8% | 74.4% |
| 1x57A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 60.0 | 5.02e-01 | 97.9% | 76.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.72 | 59.0 | 5.02e-01 | 100.0% | 66.3% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 58.0 | 5.30e-01 | 95.8% | 83.3% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 54.0 | 5.03e-01 | 89.6% | 86.2% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 55.0 | 5.39e-01 | 100.0% | 87.3% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.64 | 44.0 | 4.24e-01 | 72.9% | 94.5% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 52.0 | 4.38e-01 | 100.0% | 85.1% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.58 | 41.0 | 2.69e-01 | 75.0% | 17.3% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.57 | 39.0 | 3.39e-01 | 72.9% | 69.6% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.55 | 38.0 | 3.51e-01 | 77.1% | 54.4% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.48e-01 | 77.1% | 62.3% |
| 3jcuE00 | 1.20.5.860 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Photosystem II cytochrome b559, alpha subunit | 0.53 | 37.0 | 3.17e-01 | 89.6% | 45.6% |
| 2bskE00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.52 | 36.0 | 3.43e-01 | 77.1% | 61.9% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.52 | 43.0 | 3.12e-01 | 100.0% | 56.7% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.51 | 38.0 | 3.74e-01 | 89.6% | 82.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 2.58e-01 | 100.0% | 46.4% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.51 | 37.0 | 2.87e-01 | 83.3% | 32.0% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.51 | 42.0 | 2.87e-01 | 93.8% | 34.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589701 | 632.24.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C | 0.93 | 87.0 | 6.98e-01 | 100.0% | 81.2% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.77 | 65.0 | 3.86e-01 | 100.0% | 15.9% |
| 3598953 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 60.0 | 3.60e-01 | 100.0% | 14.9% |
| 4428371 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.72 | 47.0 | 4.87e-01 | 97.9% | 73.3% |
| 3341256 | 109.3.1.137 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF3490 | 0.68 | 58.0 | 5.51e-01 | 100.0% | 80.0% |
| 3351353 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.68 | 57.0 | 4.69e-01 | 100.0% | 80.0% |
| 3246464 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.67 | 59.0 | 3.51e-01 | 100.0% | 45.0% |
| 3610816 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 55.0 | 4.70e-01 | 100.0% | 61.2% |
| 3270040 | 101.1.16.0 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain | 0.62 | 41.0 | 3.45e-01 | 89.6% | 40.0% |
| 3769571 | 1076.1.1.6 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053 | 0.61 | 50.0 | 3.33e-01 | 100.0% | 62.1% |
| 3308343 | 1008.1.1.27 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › COPIIcoated_ERV | 0.58 | 40.0 | 3.52e-01 | 75.0% | 85.3% |
| 3991622 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 37.0 | 3.16e-01 | 72.9% | 45.0% |
| 3263572 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.54 | 43.0 | 3.16e-01 | 100.0% | 30.0% |
| 4951559 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.53 | 36.0 | 3.14e-01 | 70.8% | 93.3% |
| 3218211 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.53 | 40.0 | 3.93e-01 | 85.4% | 74.5% |
| 4954375 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.52 | 39.0 | 3.21e-01 | 97.9% | 84.2% |