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AP014629.1__BAP28937.1__X__00066
Bact-VirAP014629.1__BAP28937.1__X__00066
Identity
- Accession:
- AP014629 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Taxonomy
TaxID: 1537091
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-68
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.66 | 36.0 | 3.12e-01 | 75.8% | 35.2% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.61 | 50.0 | 4.07e-01 | 100.0% | 67.9% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.60 | 39.0 | 3.47e-01 | 98.4% | 44.1% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.59 | 41.0 | 3.69e-01 | 98.4% | 50.5% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.58 | 42.0 | 3.53e-01 | 77.4% | 69.7% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.57 | 40.0 | 3.44e-01 | 77.4% | 72.3% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 49.0 | 4.07e-01 | 96.8% | 82.7% |
| 4z32A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 4.05e-01 | 98.4% | 71.9% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.54 | 45.0 | 3.69e-01 | 100.0% | 82.7% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 39.0 | 3.48e-01 | 79.0% | 62.8% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.54 | 43.0 | 3.40e-01 | 90.3% | 66.9% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.40e-01 | 74.2% | 62.4% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.53 | 42.0 | 3.49e-01 | 95.2% | 91.4% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.34e-01 | 82.3% | 87.3% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.20e-01 | 72.6% | 72.1% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.35e-01 | 75.8% | 78.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.65 | 57.0 | 4.92e-01 | 100.0% | 95.0% |
| 5012906 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.65 | 50.0 | 3.46e-01 | 85.5% | 43.9% |
| 3787709 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 34.0 | 4.05e-01 | 80.6% | 75.0% |
| 4208229 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.62 | 33.0 | 3.62e-01 | 74.2% | 62.0% |
| 4973607 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.61 | 42.0 | 2.88e-01 | 74.2% | 31.8% |
| 3932680 | 919.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 | 0.58 | 35.0 | 3.85e-01 | 74.2% | 74.0% |
| 4441646 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.58 | 50.0 | 3.63e-01 | 100.0% | 74.6% |
| 4973029 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 29.0 | 3.40e-01 | 85.5% | 72.5% |
| 4438701 | 375.1.1.272 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 | 0.56 | 34.0 | 3.66e-01 | 79.0% | 75.5% |
| 2162624 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.55 | 38.0 | 3.19e-01 | 75.8% | 73.8% |
| 4975877 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.55 | 47.0 | 3.62e-01 | 100.0% | 85.2% |
| 4154416 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 45.0 | 3.37e-01 | 96.8% | 80.6% |
| 4114374 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 46.0 | 3.37e-01 | 100.0% | 72.4% |
| 3197429 | 244.2.1.10 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C | 0.53 | 41.0 | 2.62e-01 | 82.3% | 59.4% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 4.04e-01 | 85.5% | 97.8% |
| 3447869 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 40.0 | 2.47e-01 | 82.3% | 68.1% |
| 3804264 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.53 | 38.0 | 3.49e-01 | 79.0% | 82.4% |
| 3847839 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.52 | 43.0 | 3.03e-01 | 100.0% | 57.1% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.52 | 38.0 | 3.43e-01 | 77.4% | 79.5% |
| 4026136 | 3397.1.1.0 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 | 0.52 | 36.0 | 2.80e-01 | 74.2% | 85.7% |
| 3979962 | 9.1.1.69 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N | 0.52 | 39.0 | 3.63e-01 | 85.5% | 94.1% |
| 2417924 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.51 | 36.0 | 3.35e-01 | 96.8% | 56.5% |
| 3234953 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.51 | 42.0 | 3.03e-01 | 98.4% | 76.7% |
| 3646127 | 2003.1.5.32 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 | 0.51 | 35.0 | 2.19e-01 | 74.2% | 78.4% |