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AP014684.1__BAR92360.1__X__00022
Bact-VirAP014684.1__BAR92360.1__X__00022
Identity
- Accession:
- AP014684 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-58
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 47.0 | 4.94e-01 | 90.2% | 63.0% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.66 | 54.0 | 3.96e-01 | 86.3% | 49.2% |
| 7yj5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.64 | 46.0 | 3.26e-01 | 76.5% | 40.6% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.63 | 53.0 | 3.08e-01 | 90.2% | 56.1% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 50.0 | 4.29e-01 | 100.0% | 54.8% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.62 | 44.0 | 3.17e-01 | 76.5% | 41.2% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 52.0 | 4.45e-01 | 100.0% | 59.3% |
| 2kt9A01 | 3.30.390.140 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.61 | 55.0 | 4.41e-01 | 100.0% | 78.8% |
| 4oj8B00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.61 | 51.0 | 3.24e-01 | 96.1% | 31.0% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 52.0 | 3.83e-01 | 94.1% | 100.0% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.60 | 47.0 | 3.96e-01 | 90.2% | 80.2% |
| 2dgmA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 54.0 | 3.33e-01 | 100.0% | 98.0% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 47.0 | 4.16e-01 | 86.3% | 71.1% |
| 3fi9A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.60 | 51.0 | 3.50e-01 | 96.1% | 80.9% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.58 | 48.0 | 3.61e-01 | 92.2% | 43.3% |
| 3qfmA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.58 | 39.0 | 2.48e-01 | 88.2% | 13.6% |
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.58 | 53.0 | 4.02e-01 | 100.0% | 46.7% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.57 | 49.0 | 3.72e-01 | 94.1% | 43.9% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 46.0 | 3.71e-01 | 90.2% | 46.4% |
| 5i47B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 42.0 | 3.42e-01 | 84.3% | 46.3% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 40.0 | 3.17e-01 | 82.4% | 48.6% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 43.0 | 3.20e-01 | 90.2% | 63.5% |
| 2lstA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 39.0 | 2.94e-01 | 78.4% | 76.9% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.90e-01 | 100.0% | 54.9% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 41.0 | 2.84e-01 | 88.2% | 87.6% |
| 2v6bC02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 40.0 | 3.09e-01 | 98.0% | 47.7% |
| 1uc8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 37.0 | 3.14e-01 | 90.2% | 43.6% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 38.0 | 2.90e-01 | 84.3% | 45.7% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 38.0 | 3.25e-01 | 88.2% | 50.6% |
| 4rckA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 41.0 | 2.76e-01 | 90.2% | 38.7% |
| 2pjhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 31.0 | 2.76e-01 | 72.5% | 42.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4296237 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.80 | 47.0 | 3.24e-01 | 96.1% | 19.4% |
| 5012088 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.78 | 46.0 | 3.46e-01 | 74.5% | 28.2% |
| 3938986 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.71 | 57.0 | 3.88e-01 | 86.3% | 73.5% |
| 3238353 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.71 | 57.0 | 3.69e-01 | 88.2% | 58.2% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.70 | 51.0 | 4.48e-01 | 78.4% | 93.3% |
| 4634374 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.69 | 56.0 | 4.13e-01 | 86.3% | 50.0% |
| 4995243 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.68 | 56.0 | 4.85e-01 | 100.0% | 60.0% |
| 4190296 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.68 | 53.0 | 3.97e-01 | 84.3% | 49.2% |
| 3979335 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.67 | 59.0 | 4.34e-01 | 94.1% | 81.7% |
| 3258452 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 55.0 | 4.19e-01 | 92.2% | 96.7% |
| 4979608 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.66 | 54.0 | 4.01e-01 | 88.2% | 49.6% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.65 | 57.0 | 3.97e-01 | 94.1% | 40.0% |
| 3572231 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.65 | 56.0 | 3.73e-01 | 94.1% | 66.5% |
| 4074424 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.65 | 56.0 | 4.37e-01 | 92.2% | 85.0% |
| 4037619 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.65 | 58.0 | 4.88e-01 | 100.0% | 77.6% |
| 4038195 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.64 | 57.0 | 4.83e-01 | 100.0% | 77.6% |
| 4147401 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.64 | 48.0 | 4.16e-01 | 88.2% | 50.6% |
| 5070445 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.62 | 49.0 | 3.62e-01 | 84.3% | 46.7% |
| 4531300 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.62 | 47.0 | 4.01e-01 | 90.2% | 50.6% |
| 5063197 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 45.0 | 3.48e-01 | 78.4% | 50.0% |
| 5049138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 50.0 | 3.79e-01 | 96.1% | 37.0% |
| 4937734 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.61 | 47.0 | 3.62e-01 | 84.3% | 49.6% |
| 4543638 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.61 | 54.0 | 3.79e-01 | 100.0% | 83.6% |
| 5063750 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 55.0 | 3.53e-01 | 96.1% | 79.0% |
| 3701157 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.61 | 55.0 | 3.25e-01 | 100.0% | 38.0% |
| 4164512 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.60 | 48.0 | 3.27e-01 | 92.2% | 79.1% |
| 4279367 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 51.0 | 4.38e-01 | 94.1% | 62.5% |
| 3976770 | 3747.1.1.1 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod | 0.59 | 55.0 | 4.29e-01 | 100.0% | 79.0% |
| 4932883 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 52.0 | 3.84e-01 | 96.1% | 43.2% |
| 7742 | 4172.1.1.1 ↗ | a+b duplicates or obligate multimers › Phosphoprotein oligomerization domain-like › Phosphoprotein oligomerization domain-like › Phosphoprotein oligomerization domain-like › Phosphoprotein | 0.58 | 47.0 | 4.29e-01 | 90.2% | 67.7% |
| 4159425 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.58 | 49.0 | 3.68e-01 | 92.2% | 45.0% |
| 2101003 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.58 | 30.0 | 2.57e-01 | 76.5% | 29.1% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.57 | 32.0 | 3.42e-01 | 82.4% | 62.2% |
| 3390259 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.57 | 47.0 | 3.19e-01 | 88.2% | 70.0% |
| 3343478 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.57 | 42.0 | 3.34e-01 | 78.4% | 48.0% |
| 4995220 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 45.0 | 3.54e-01 | 86.3% | 44.0% |
| 4070661 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 45.0 | 4.13e-01 | 88.2% | 67.7% |
| 5028326 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.56 | 40.0 | 2.72e-01 | 76.5% | 28.4% |
| 3361836 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.55 | 41.0 | 2.92e-01 | 84.3% | 90.3% |
| 4631411 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.55 | 45.0 | 3.20e-01 | 92.2% | 96.8% |
| 3359932 | 101.1.11.3 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP | 0.54 | 38.0 | 3.66e-01 | 80.4% | 80.0% |
| 5000069 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.53 | 41.0 | 2.76e-01 | 84.3% | 28.7% |
| 4985499 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.53 | 38.0 | 2.64e-01 | 78.4% | 29.0% |
| 3389942 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.52 | 39.0 | 3.21e-01 | 80.4% | 91.1% |
| 5058066 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.52 | 46.0 | 3.44e-01 | 96.1% | 43.5% |
| 3606232 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 42.0 | 3.46e-01 | 96.1% | 80.6% |