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AP014684.1__BAR92404.1__X__00066

Bact-Vir

AP014684.1__BAR92404.1__X__00066

Identity

Accession:
AP014684 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PS-1

TaxID: 1573458

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-64
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03869.21 best Arc 38.3 1.30e-09 73.2% 78.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.93 67.0 5.43e-01 76.8% 43.8%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.74 51.0 3.57e-01 73.2% 62.4%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 46.0 4.27e-01 71.4% 57.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.71e-01 80.4% 66.3%
7d1tA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.60 41.0 2.89e-01 71.4% 90.7%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 44.0 3.13e-01 82.1% 70.4%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 41.0 2.82e-01 76.8% 64.6%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 40.0 3.71e-01 76.8% 84.9%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.50 35.0 3.06e-01 76.8% 68.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050855 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.91 63.0 6.37e-01 71.4% 90.9%
2455631 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.90 60.0 5.20e-01 71.4% 47.0%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 61.0 4.79e-01 71.4% 40.0%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 63.0 6.38e-01 75.0% 76.4%
3941449 101.1.11.42 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD_like 0.85 64.0 5.92e-01 80.4% 95.7%
5035425 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 60.0 4.74e-01 75.0% 47.6%
2081534 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.82 56.0 5.20e-01 80.4% 57.1%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 63.0 5.75e-01 83.9% 82.7%
4937892 101.1.3.32 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › RHH_1 0.81 58.0 4.69e-01 75.0% 66.0%
4958205 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 58.0 6.09e-01 76.8% 90.0%
5018588 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 57.0 5.59e-01 75.0% 76.7%
4988201 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 54.0 5.35e-01 71.4% 68.3%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.78 59.0 5.33e-01 80.4% 80.0%
5022880 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.78 58.0 5.42e-01 80.4% 71.4%
5064868 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.78 61.0 5.23e-01 85.7% 71.1%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.78 62.0 5.48e-01 85.7% 81.2%
3279727 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 61.0 6.48e-01 87.5% 96.0%
3286839 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 69.0 6.35e-01 100.0% 82.9%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 60.0 5.40e-01 85.7% 86.7%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 53.0 5.41e-01 78.6% 78.2%
5050966 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.71 63.0 5.21e-01 96.4% 93.7%
5028248 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 54.0 5.66e-01 91.1% 94.0%
4632125 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.70 62.0 5.71e-01 94.6% 75.7%
2771700 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.68 63.0 5.31e-01 100.0% 90.8%
4174312 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.68 50.0 3.60e-01 78.6% 88.1%
4993165 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.67 62.0 5.11e-01 100.0% 97.9%
3515728 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.61 45.0 2.57e-01 80.4% 13.7%
3631499 3965.1.1.0 ↗ alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain 0.56 48.0 3.29e-01 100.0% 35.3%
3372627 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.50 41.0 3.18e-01 89.3% 89.6%