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AP014858.1__BAV80819.1__X__00036

Bact-Vir

AP014858.1__BAV80819.1__X__00036

Identity

Accession:
AP014858 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_RYC

TaxID: 1653734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-66
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.77 68.0 5.40e-01 100.0% 50.5%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.77 55.0 5.97e-01 96.1% 100.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 6.08e-01 96.1% 98.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.31e-01 100.0% 69.9%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.86e-01 100.0% 83.3%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.71e-01 100.0% 87.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 4.44e-01 100.0% 71.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.44e-01 96.1% 89.7%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.01e-01 98.0% 88.7%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.23e-01 100.0% 79.7%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 56.0 3.82e-01 100.0% 98.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.49e-01 100.0% 57.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.47e-01 98.0% 89.3%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.73e-01 100.0% 66.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 5.13e-01 98.0% 96.4%
1k0hA00 2.40.10.180 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins 0.63 51.0 4.04e-01 96.1% 55.6%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 50.0 3.99e-01 100.0% 54.0%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.62 55.0 4.27e-01 100.0% 45.5%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 52.0 4.62e-01 100.0% 67.9%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 45.0 3.59e-01 96.1% 40.4%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.60 50.0 3.19e-01 100.0% 22.8%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 51.0 4.57e-01 100.0% 71.6%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 50.0 3.54e-01 100.0% 78.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.91e-01 100.0% 55.3%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 2.99e-01 100.0% 34.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 40.0 3.08e-01 78.4% 65.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 44.0 3.11e-01 100.0% 38.3%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.53 43.0 3.19e-01 96.1% 72.6%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.52 37.0 2.44e-01 78.4% 77.4%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 40.0 3.26e-01 96.1% 41.4%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.23e-01 96.1% 37.6%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.05e-01 100.0% 31.0%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.89e-01 70.6% 91.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.06e-01 100.0% 86.2%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.74 62.0 6.29e-01 100.0% 96.0%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.34e-01 100.0% 77.8%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.73 61.0 6.15e-01 96.1% 94.0%
3593768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.02e-01 98.0% 64.2%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.71 61.0 4.00e-01 100.0% 23.3%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.71 60.0 4.85e-01 100.0% 49.0%
3661025 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 61.0 4.77e-01 100.0% 56.5%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 4.72e-01 100.0% 45.0%
3609866 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.70 60.0 4.17e-01 100.0% 73.1%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.69 59.0 5.63e-01 98.0% 81.7%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.61e-01 100.0% 80.0%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.69 59.0 5.51e-01 100.0% 87.7%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.68e-01 100.0% 90.0%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 3.89e-01 100.0% 26.0%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.67 56.0 5.54e-01 96.1% 94.5%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.67 57.0 5.62e-01 98.0% 96.4%
4473115 4.1.1.5 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e 0.67 56.0 4.57e-01 100.0% 49.0%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.55e-01 100.0% 90.0%
4101476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.07e-01 100.0% 81.3%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 4.78e-01 100.0% 67.8%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.66 54.0 5.36e-01 96.1% 98.1%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 57.0 5.15e-01 100.0% 72.9%
3775836 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.65 55.0 4.43e-01 100.0% 74.5%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 53.0 5.41e-01 96.1% 94.0%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.13e-01 100.0% 77.1%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.65 55.0 4.32e-01 100.0% 72.2%
3396594 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.41e-01 100.0% 93.3%
4031603 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.63 52.0 4.40e-01 100.0% 74.7%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 49.0 4.85e-01 96.1% 85.5%
4992238 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.61 50.0 4.29e-01 98.0% 74.4%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 51.0 5.02e-01 100.0% 92.7%
5053432 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.60 50.0 4.17e-01 98.0% 72.6%
4166012 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 47.0 4.30e-01 100.0% 65.3%
4011239 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 49.0 4.32e-01 100.0% 62.5%
3904189 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 49.0 4.03e-01 100.0% 50.0%
5076995 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 48.0 4.21e-01 100.0% 61.3%
4080130 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 47.0 4.27e-01 100.0% 66.7%
4943366 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 47.0 4.06e-01 100.0% 57.6%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 4.03e-01 100.0% 65.7%
3228794 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.56 45.0 4.13e-01 94.1% 87.1%
3493244 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.55 45.0 2.85e-01 98.0% 18.8%
4083044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 44.0 4.04e-01 100.0% 66.7%
4944162 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.54 44.0 3.79e-01 96.1% 73.3%
3988697 10.12.1.31 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.53 44.0 3.07e-01 100.0% 29.3%
3401719 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.53 41.0 2.97e-01 100.0% 60.0%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 43.0 3.47e-01 100.0% 45.2%
4032992 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 43.0 3.48e-01 100.0% 65.5%
5059262 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.54e-01 100.0% 56.4%