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AP014858.1__BAV80921.1__X__00138

Bact-Vir

AP014858.1__BAV80921.1__X__00138

Identity

Accession:
AP014858 ↗
Kingdom:
phage

Quality

56.3 mean pLDDT

Taxonomy

TaxID: 1653734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-81
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.79 51.0 5.96e-01 96.7% 95.3%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.73 50.0 5.25e-01 100.0% 80.0%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.66 45.0 4.79e-01 100.0% 84.3%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 29.0 3.03e-01 73.8% 52.6%
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 37.0 3.16e-01 85.2% 76.5%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.50 42.0 4.13e-01 100.0% 92.3%
8cjhA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 34.0 2.18e-01 75.4% 66.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989854 3761.1.1.4 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.84 53.0 4.72e-01 100.0% 47.1%
3987740 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.82 51.0 6.09e-01 98.4% 97.5%
3917719 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.75 51.0 5.80e-01 98.4% 95.6%
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 51.0 5.84e-01 98.4% 100.0%
3528795 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.73 47.0 5.28e-01 100.0% 88.9%
1107990 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.66 45.0 4.81e-01 100.0% 86.0%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.65 47.0 5.07e-01 100.0% 94.0%
2495545 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.65 42.0 2.48e-01 98.4% 8.8%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 43.0 3.61e-01 100.0% 47.3%
3534694 4050.1.1.2 few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A 0.54 33.0 3.71e-01 90.2% 84.4%
4978678 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 28.0 2.95e-01 85.2% 49.1%
4388421 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.52 41.0 3.90e-01 98.4% 73.3%
3998555 327.11.2.6 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 0.51 37.0 3.45e-01 88.5% 60.0%
D2 medium residues 90-165
PDB
D3 medium residues 172-219
PDB
D4 medium residues 225-289
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.62 54.0 5.14e-01 100.0% 94.9%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 46.0 3.42e-01 80.0% 40.5%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 44.0 3.06e-01 100.0% 22.9%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 43.0 3.18e-01 100.0% 27.8%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.60 52.0 3.94e-01 100.0% 50.0%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.86e-01 90.8% 96.9%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 46.0 3.31e-01 89.2% 54.0%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.59 50.0 4.02e-01 100.0% 81.3%
7z0sE02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.59 48.0 3.09e-01 92.3% 79.5%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 49.0 4.09e-01 100.0% 54.6%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.56 45.0 3.42e-01 90.8% 59.5%
7p7cC02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.55 42.0 2.76e-01 87.7% 89.0%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.55 45.0 3.57e-01 100.0% 79.2%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.55 36.0 3.99e-01 95.4% 95.7%
2wp8B00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 40.0 2.92e-01 83.1% 92.2%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 48.0 3.54e-01 100.0% 44.8%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 32.0 3.60e-01 100.0% 97.4%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.39e-01 84.6% 70.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.81e-01 100.0% 69.7%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.53 42.0 4.28e-01 100.0% 95.5%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.82e-01 98.5% 31.6%
1ztcA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 37.0 2.69e-01 84.6% 23.9%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 42.0 3.17e-01 100.0% 96.5%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.77e-01 100.0% 26.4%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 43.0 4.25e-01 100.0% 94.2%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.76e-01 98.5% 31.4%
4g0bA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 39.0 2.82e-01 87.7% 37.7%
1ev7A01 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.51 42.0 3.26e-01 100.0% 40.1%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.50 35.0 2.98e-01 75.4% 41.2%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 40.0 2.91e-01 100.0% 30.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073325 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.64 57.0 4.44e-01 100.0% 76.4%
3938083 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 44.0 3.92e-01 100.0% 49.5%
3520870 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.63 50.0 3.37e-01 90.8% 39.6%
3598900 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 55.0 3.67e-01 100.0% 49.8%
5038529 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.63 49.0 4.95e-01 84.6% 92.3%
4970789 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.63 55.0 4.32e-01 100.0% 75.0%
None 0.63 45.0 3.15e-01 100.0% 22.2%
4496894 2003.1.5.153 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.62 45.0 3.13e-01 100.0% 21.7%
4395723 2003.1.5.153 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.62 45.0 3.17e-01 100.0% 23.7%
2105336 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.62 54.0 4.15e-01 100.0% 65.8%
3391363 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.62 54.0 3.96e-01 100.0% 45.0%
3250766 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.62 45.0 3.05e-01 100.0% 20.4%
3960667 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 45.0 3.56e-01 78.5% 49.6%
4646311 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.61 44.0 3.13e-01 100.0% 23.2%
4950776 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.61 53.0 4.21e-01 100.0% 82.9%
4957730 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.61 53.0 4.19e-01 100.0% 67.1%
3624651 7528.1.1.5 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II 0.60 52.0 4.31e-01 100.0% 74.2%
3235708 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 42.0 3.72e-01 100.0% 50.0%
3937854 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 41.0 3.62e-01 100.0% 48.0%
4995643 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.59 50.0 3.97e-01 100.0% 68.3%
1137984 7528.1.1.5 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II 0.58 51.0 4.20e-01 100.0% 75.4%
4936020 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.58 43.0 3.25e-01 100.0% 31.5%
5016524 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.58 51.0 3.97e-01 100.0% 66.2%
5016521 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.58 50.0 4.00e-01 100.0% 73.3%
3933294 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 41.0 3.60e-01 100.0% 47.6%
3745210 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.57 41.0 4.40e-01 92.3% 90.9%
4007775 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.57 45.0 3.92e-01 92.3% 56.0%
3462747 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.57 42.0 3.03e-01 80.0% 35.5%
4558844 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 46.0 4.66e-01 100.0% 93.8%
4582116 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.56 45.0 4.51e-01 98.5% 93.8%
5010105 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.56 49.0 4.00e-01 100.0% 52.0%
4149106 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.56 49.0 3.90e-01 100.0% 48.1%
3934183 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.56 39.0 3.46e-01 100.0% 46.7%
3220873 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.56 39.0 3.45e-01 100.0% 49.0%
3694187 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 47.0 2.96e-01 100.0% 18.5%
360186 809.1.1.2 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › BLIP 0.54 45.0 4.41e-01 95.4% 89.0%
3931076 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.54 38.0 3.24e-01 100.0% 41.7%
5070577 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 44.0 3.89e-01 100.0% 97.3%
4956648 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.54 47.0 3.75e-01 100.0% 54.8%
5079388 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 46.0 3.32e-01 100.0% 42.1%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.52 43.0 3.93e-01 100.0% 89.5%
5071281 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.52 46.0 3.09e-01 100.0% 78.4%
3941339 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.33e-01 81.5% 94.5%
3239559 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.52 43.0 3.65e-01 100.0% 100.0%
5034123 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 43.0 3.61e-01 100.0% 64.8%
9354 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.51 37.0 2.73e-01 100.0% 24.9%
869287 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.51 43.0 4.22e-01 100.0% 91.5%
3603181 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 42.0 4.33e-01 96.9% 100.0%
3521820 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 44.0 3.02e-01 98.5% 30.6%
3510346 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 43.0 3.53e-01 100.0% 57.7%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.50 39.0 3.82e-01 100.0% 77.3%
2083983 269.1.1.2 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.50 43.0 2.86e-01 100.0% 30.7%
3987891 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.50 43.0 2.80e-01 100.0% 21.2%