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AP014858.1__BAV80975.1__X__00192

Bact-Vir

AP014858.1__BAV80975.1__X__00192

Identity

Accession:
AP014858 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Taxonomy

TaxID: 1653734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-112
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.75 50.0 4.60e-01 95.5% 53.5%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.70 47.0 3.42e-01 100.0% 25.0%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.69 44.0 4.40e-01 100.0% 62.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 46.0 3.89e-01 100.0% 41.2%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 43.0 4.23e-01 98.5% 62.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.66 42.0 3.52e-01 97.0% 38.7%
2abyA00 3.30.70.1980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 0.64 47.0 3.86e-01 100.0% 43.4%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 47.0 3.70e-01 100.0% 39.0%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 43.0 3.84e-01 97.0% 50.0%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.39e-01 97.0% 67.5%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 53.0 3.94e-01 92.5% 97.6%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 49.0 3.99e-01 100.0% 47.9%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.42e-01 89.6% 83.6%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.34e-01 97.0% 65.9%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 43.0 3.93e-01 97.0% 57.3%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.04e-01 97.0% 55.2%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 46.0 3.80e-01 88.1% 92.3%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.13e-01 88.1% 35.9%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.51e-01 100.0% 72.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 37.0 3.63e-01 98.5% 58.7%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 40.0 3.60e-01 97.0% 52.6%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.42e-01 97.0% 79.0%
2qy6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 44.0 3.05e-01 86.6% 89.4%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.45e-01 97.0% 96.5%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.44e-01 94.0% 96.2%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 39.0 3.79e-01 97.0% 65.3%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 3.73e-01 100.0% 85.6%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 39.0 3.79e-01 97.0% 65.8%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 36.0 3.53e-01 98.5% 60.5%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 39.0 2.88e-01 97.0% 27.2%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 39.0 3.29e-01 79.1% 85.6%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 41.0 2.99e-01 97.0% 30.3%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.35e-01 97.0% 45.7%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 33.0 2.95e-01 94.0% 39.6%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.44e-01 94.0% 92.3%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 40.0 3.22e-01 100.0% 40.1%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 43.0 3.04e-01 94.0% 94.2%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 44.0 4.06e-01 100.0% 71.1%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 39.0 3.81e-01 97.0% 73.0%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 40.0 3.19e-01 100.0% 38.9%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.78e-01 91.0% 70.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.97e-01 100.0% 67.7%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.79e-01 100.0% 81.9%
4nehA04 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.52 35.0 2.78e-01 71.6% 55.8%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.51 43.0 2.94e-01 97.0% 32.2%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.47e-01 100.0% 53.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3811780 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.83 56.0 4.58e-01 100.0% 40.9%
4045503 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.75 47.0 4.56e-01 97.0% 57.3%
4185338 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 54.0 5.08e-01 97.0% 65.0%
4992480 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 46.0 4.21e-01 95.5% 48.9%
3602264 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 46.0 4.30e-01 95.5% 51.8%
4058841 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.72 53.0 4.78e-01 98.5% 57.8%
5015050 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.69 54.0 3.70e-01 85.1% 83.5%
3533042 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.68 46.0 4.07e-01 97.0% 48.4%
4943245 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.67 44.0 3.59e-01 97.0% 34.6%
4981191 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.67 42.0 4.16e-01 97.0% 60.0%
3965385 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.67 44.0 4.41e-01 98.5% 65.7%
3924304 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 43.0 4.42e-01 97.0% 69.2%
4994470 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 40.0 3.93e-01 97.0% 56.0%
4995222 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 44.0 4.29e-01 97.0% 64.0%
3937747 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 43.0 2.84e-01 70.1% 36.0%
3969151 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.64 46.0 4.37e-01 98.5% 63.7%
3931635 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 44.0 4.31e-01 97.0% 65.3%
3491344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 3.76e-01 70.1% 51.2%
3602142 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 45.0 3.92e-01 97.0% 47.6%
3285125 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.63 50.0 3.54e-01 88.1% 83.8%
3477897 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.62 45.0 4.09e-01 97.0% 56.7%
3485233 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.62 51.0 3.40e-01 91.0% 70.1%
5036327 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.62 40.0 4.06e-01 98.5% 67.7%
3923775 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 43.0 4.17e-01 100.0% 63.7%
1904137 2003.1.5.165 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.61 51.0 3.51e-01 92.5% 77.2%
3190333 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 50.0 3.16e-01 89.6% 75.4%
4947062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.18e-01 97.0% 60.0%
3468223 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.60 47.0 3.01e-01 100.0% 16.8%
3788427 101.1.2.207 alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.60 50.0 4.41e-01 100.0% 63.0%
3412547 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 40.0 3.71e-01 98.5% 52.2%
4929322 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 44.0 3.87e-01 91.0% 53.0%
5023262 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.59 39.0 4.00e-01 95.5% 70.8%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.59 43.0 3.74e-01 100.0% 49.5%
3929061 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 46.0 4.12e-01 100.0% 61.1%
4325040 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 48.0 3.92e-01 97.0% 49.2%
5018915 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 41.0 3.10e-01 76.1% 78.1%
4330210 327.6.1.6 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.57 41.0 2.70e-01 91.0% 18.5%
5082567 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.56 42.0 3.10e-01 100.0% 28.9%
4023297 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 47.0 3.17e-01 98.5% 50.2%
3926827 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.56 47.0 2.77e-01 98.5% 11.2%
4988082 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 4.05e-01 100.0% 75.7%
5052754 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.55 37.0 3.61e-01 98.5% 60.0%
4991352 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 43.0 2.92e-01 89.6% 68.8%
5013748 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 2.98e-01 83.6% 68.3%
5026539 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.89e-01 97.0% 64.4%
3713489 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.36e-01 98.5% 34.2%
5078891 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 36.0 3.89e-01 70.1% 100.0%
4946421 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.54 41.0 2.38e-01 85.1% 11.5%
4030568 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.53 42.0 2.78e-01 100.0% 18.2%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.53 43.0 3.49e-01 100.0% 43.3%
3549847 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.53 41.0 2.65e-01 89.6% 62.7%
4656995 304.9.1.71 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD 0.53 36.0 2.99e-01 98.5% 36.9%
4062392 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.53 48.0 4.18e-01 100.0% 77.0%
3487954 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 39.0 3.72e-01 100.0% 65.9%
5032176 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 37.0 3.82e-01 74.6% 90.0%
3242974 103.17.1.1 alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain › Pecanex_C 0.53 43.0 2.96e-01 94.0% 100.0%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.81e-01 100.0% 62.0%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.85e-01 100.0% 69.4%
3565365 5054.1.1.110 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Pecanex_C 0.52 44.0 3.11e-01 98.5% 99.1%
4997522 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.52 37.0 3.55e-01 97.0% 63.7%
3940070 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 42.0 2.84e-01 98.5% 65.0%
5033448 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.51 47.0 4.21e-01 100.0% 85.6%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.51 42.0 3.38e-01 100.0% 44.5%
3603693 101.1.2.145 alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.51 43.0 3.23e-01 97.0% 37.1%
4931923 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 45.0 4.28e-01 100.0% 93.8%