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AP014858.1__BAV81013.1__X__00230

Bact-Vir

AP014858.1__BAV81013.1__X__00230

Identity

Accession:
AP014858 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_RYC

TaxID: 1653734

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Domain cluster: rep: IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000264__D5-73
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.75 53.0 3.63e-01 74.6% 21.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.70 50.0 3.47e-01 76.2% 28.2%
2cu2A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.68 58.0 3.66e-01 96.8% 69.9%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 44.0 3.98e-01 71.4% 97.8%
2x65A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 51.0 3.30e-01 96.8% 71.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.93e-01 77.8% 83.3%
1ir6A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 48.0 3.93e-01 100.0% 82.9%
6qu3A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.45e-01 98.4% 36.5%
3n75A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 44.0 3.31e-01 87.3% 67.6%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 2.85e-01 96.8% 32.5%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.31e-01 98.4% 74.2%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 33.0 2.84e-01 96.8% 34.6%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.84e-01 84.1% 83.9%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 43.0 3.83e-01 85.7% 83.0%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 32.0 2.54e-01 96.8% 25.7%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.56 43.0 4.40e-01 88.9% 94.8%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.55 41.0 3.38e-01 85.7% 68.8%
1pfkA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.38e-01 98.4% 34.4%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.55 35.0 3.56e-01 77.8% 66.7%
2r7cA02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.55 44.0 3.43e-01 93.7% 42.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.72e-01 84.1% 84.8%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 2.97e-01 88.9% 93.4%
4nocD00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 43.0 3.43e-01 90.5% 55.0%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 42.0 3.39e-01 84.1% 86.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 2.96e-01 95.2% 39.6%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.53 41.0 3.03e-01 84.1% 74.9%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.53 42.0 3.06e-01 92.1% 69.3%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.02e-01 100.0% 68.2%
4be9B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.55e-01 92.1% 54.2%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 41.0 2.99e-01 90.5% 49.5%
2gu0A02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.53 42.0 3.30e-01 95.2% 42.1%
2py6A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.69e-01 71.4% 29.4%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 40.0 3.33e-01 87.3% 65.6%
2memA00 3.90.1150.190 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain 0.52 45.0 3.66e-01 96.8% 63.9%
5afuV00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.51 42.0 3.15e-01 92.1% 73.3%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 42.0 3.05e-01 95.2% 59.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980132 823.1.1.1 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.70 53.0 5.58e-01 85.7% 96.4%
3279969 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.69 48.0 3.43e-01 73.0% 28.0%
3168448 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.67 54.0 4.28e-01 88.9% 77.5%
5038176 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.66 45.0 4.24e-01 77.8% 57.7%
5002053 7516.1.1.187 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › MannoseP_isomer 0.64 54.0 3.25e-01 96.8% 50.3%
3786023 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.61 47.0 3.28e-01 87.3% 39.6%
3541292 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.05e-01 85.7% 92.4%
4953465 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.61 49.0 3.52e-01 90.5% 30.3%
4016682 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 48.0 2.88e-01 88.9% 90.4%
3368873 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.61 42.0 3.44e-01 74.6% 38.4%
4997756 2007.1.4.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.61 47.0 3.43e-01 85.7% 100.0%
3899864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.05e-01 88.9% 95.2%
3905461 148.1.3.371 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BTB 0.58 48.0 4.06e-01 100.0% 100.0%
5032910 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.57 48.0 3.93e-01 93.7% 67.5%
4026828 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.57 47.0 3.43e-01 95.2% 57.4%
4070526 2007.1.4.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.56 47.0 3.25e-01 100.0% 66.3%
4990030 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 3.00e-01 87.3% 97.8%
4046812 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.55 49.0 3.46e-01 98.4% 43.2%
4869676 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 41.0 2.97e-01 87.3% 88.3%
4951675 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.54 41.0 3.55e-01 82.5% 73.0%
3481148 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.53 43.0 2.96e-01 87.3% 27.5%
5033515 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 45.0 3.29e-01 100.0% 72.6%
4979123 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 43.0 3.18e-01 93.7% 35.6%
3973004 208.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 0.52 37.0 2.69e-01 96.8% 24.4%
5041715 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 39.0 3.38e-01 87.3% 60.0%
5065439 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 36.0 2.78e-01 95.2% 28.5%
5042531 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 39.0 2.69e-01 84.1% 30.8%
3444202 4267.1.1.4 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › p450 0.51 43.0 2.98e-01 100.0% 84.7%
5072831 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 3.27e-01 79.4% 63.5%
4986692 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 39.0 3.08e-01 85.7% 97.9%
5058358 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 39.0 3.60e-01 85.7% 82.4%
3998700 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.51 36.0 3.41e-01 85.7% 61.3%
4051388 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.50 41.0 2.51e-01 95.2% 50.1%