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AP014858.1__BAV81026.1__X__00243

Bact-Vir

AP014858.1__BAV81026.1__X__00243

Identity

Accession:
AP014858 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_RYC

TaxID: 1653734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-142
PDB
Domain cluster: rep: MW394390.1__QQV91812.1__vBKpMFBKp34_065__00065__D3-27_104-177
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 30.0 3.67e-01 73.4% 55.8%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 30.0 3.37e-01 72.7% 48.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.70 30.0 4.56e-01 73.4% 98.2%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.68 29.0 2.93e-01 74.1% 37.7%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.66 28.0 4.12e-01 74.1% 91.5%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 29.0 2.98e-01 73.4% 43.6%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 28.0 2.96e-01 73.4% 45.8%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 28.0 3.33e-01 80.6% 65.6%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 3.10e-01 90.6% 34.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 35.0 3.50e-01 95.7% 65.0%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 41.0 4.30e-01 90.6% 92.0%
1x4zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.11e-01 90.6% 66.0%
4pc3C02 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.52 29.0 3.48e-01 87.8% 84.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 34.0 3.92e-01 92.8% 93.1%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.50 33.0 2.86e-01 100.0% 42.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958189 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.74 44.0 4.62e-01 86.3% 64.8%
3962256 295.1.1.32 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DDE_Tnp_1 0.73 44.0 4.53e-01 88.5% 62.2%
3957639 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.73 44.0 3.41e-01 88.5% 29.0%
3962355 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.73 44.0 3.89e-01 88.5% 42.5%
None — 0.72 43.0 3.21e-01 87.8% 24.8%
3961876 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 43.0 3.16e-01 87.8% 23.7%
3598409 244.1.1.40 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › BCS1_N 0.63 28.0 3.11e-01 88.5% 49.6%
3789856 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 33.0 3.57e-01 88.5% 64.3%
3596299 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 37.0 4.18e-01 84.9% 88.6%
3643150 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 25.0 3.16e-01 94.2% 72.9%
3799231 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.52 40.0 3.84e-01 93.5% 71.6%
3437304 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 29.0 3.36e-01 91.4% 78.9%
5078060 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 29.0 3.16e-01 92.1% 66.4%
3328311 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.51 38.0 3.91e-01 93.5% 80.7%
3815383 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 24.0 3.02e-01 91.4% 71.8%
1687158 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.51 32.0 3.00e-01 89.2% 52.1%
3391461 3308.2.1.1 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD 0.51 27.0 3.68e-01 97.8% 98.7%
3817811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 24.0 2.98e-01 92.1% 70.6%
3937491 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 4.03e-01 92.8% 83.7%
4974362 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 33.0 2.68e-01 79.1% 37.1%