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AP014887.1__BAV81049.1__X__00005
Bact-VirAP014887.1__BAV81049.1__X__00005
Identity
- Accession:
- AP014887 ↗
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-117
Domain cluster:
rep: ON453901.1__WAK79567.1__X__00040__D22-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02924.20 best | HDPD | 40.3 | 4.40e-10 | 96.1% | 77.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.84 | 73.0 | 7.53e-01 | 100.0% | 98.9% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.82 | 71.0 | 7.43e-01 | 97.1% | 100.0% |
| 3qgaA02 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.59 | 48.0 | 4.54e-01 | 95.1% | 73.0% |
| 4ep8B00 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.59 | 47.0 | 4.72e-01 | 93.1% | 85.1% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 42.0 | 4.73e-01 | 97.1% | 98.7% |
| 1h8uB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.56 | 28.0 | 2.76e-01 | 96.1% | 40.5% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 30.0 | 3.31e-01 | 95.1% | 68.4% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.50 | 32.0 | 3.43e-01 | 79.4% | 73.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.82 | 71.0 | 6.96e-01 | 100.0% | 86.2% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.81 | 72.0 | 7.34e-01 | 100.0% | 97.0% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 46.0 | 5.48e-01 | 98.0% | 100.0% |
| 3694337 | 11.5.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta | 0.60 | 48.0 | 4.61e-01 | 95.1% | 73.3% |
| 4282537 | 11.5.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta | 0.60 | 48.0 | 4.56e-01 | 95.1% | 73.3% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 40.0 | 4.58e-01 | 95.1% | 100.0% |
| 4514735 | 1049.2.1.4 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J | 0.58 | 41.0 | 3.28e-01 | 81.4% | 38.9% |
| 4956897 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 43.0 | 4.81e-01 | 96.1% | 100.0% |
| 3820836 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.50 | 36.0 | 3.89e-01 | 79.4% | 89.4% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.50 | 32.0 | 3.45e-01 | 79.4% | 74.4% |