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AP014888.1__BAV81141.1__X__00039
Bact-VirAP014888.1__BAV81141.1__X__00039
Identity
- Accession:
- AP014888 ↗
- Kingdom:
- phage
Quality
57.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 134-181
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.81 | 67.0 | 6.43e-01 | 100.0% | 80.0% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.77 | 60.0 | 5.46e-01 | 97.9% | 63.6% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.72 | 49.0 | 4.59e-01 | 70.8% | 64.4% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.70 | 60.0 | 5.72e-01 | 100.0% | 79.3% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.70 | 56.0 | 5.00e-01 | 89.6% | 63.2% |
| 2xriA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 62.0 | 4.01e-01 | 100.0% | 41.5% |
| 2d5rA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.67 | 60.0 | 3.73e-01 | 100.0% | 36.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.66 | 55.0 | 4.57e-01 | 97.9% | 85.4% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 53.0 | 3.60e-01 | 97.9% | 40.1% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.59 | 42.0 | 3.98e-01 | 77.1% | 65.0% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.59 | 43.0 | 3.19e-01 | 77.1% | 33.6% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 2.91e-01 | 95.8% | 20.7% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 46.0 | 3.15e-01 | 85.4% | 50.9% |
| 4xaiB02 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 40.0 | 2.69e-01 | 72.9% | 87.2% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.58 | 47.0 | 3.32e-01 | 100.0% | 28.0% |
| 4r2fA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 50.0 | 3.34e-01 | 100.0% | 61.8% |
| 2kbzA00 | 1.10.246.150 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 43.0 | 3.49e-01 | 85.4% | 79.8% |
| 5iaiA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 48.0 | 3.19e-01 | 100.0% | 62.8% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 41.0 | 3.42e-01 | 83.3% | 82.8% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.55 | 38.0 | 3.36e-01 | 72.9% | 82.4% |
| 2zyzB01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.55 | 39.0 | 3.20e-01 | 87.5% | 40.9% |
| 5d18A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 3.00e-01 | 95.8% | 57.4% |
| 2kngA01 | 4.10.320.10 | Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › E3-binding domain | 0.54 | 43.0 | 4.48e-01 | 87.5% | 97.7% |
| 2hwjA01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.54 | 38.0 | 2.82e-01 | 75.0% | 69.0% |
| 5jtfB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.17e-01 | 97.9% | 94.3% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.52 | 47.0 | 3.20e-01 | 100.0% | 66.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.94 | 80.0 | 8.29e-01 | 100.0% | 97.8% |
| 3635200 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 69.0 | 6.59e-01 | 97.9% | 72.7% |
| 4928759 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 60.0 | 6.21e-01 | 87.5% | 93.3% |
| 3711482 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.69 | 62.0 | 3.95e-01 | 100.0% | 40.9% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.68 | 59.0 | 3.85e-01 | 97.9% | 47.6% |
| 4338737 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.68 | 39.0 | 4.05e-01 | 100.0% | 62.2% |
| 4931792 | 306.3.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc | 0.63 | 51.0 | 3.38e-01 | 95.8% | 22.6% |
| 5059555 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.62 | 52.0 | 3.15e-01 | 100.0% | 45.3% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 47.0 | 4.31e-01 | 93.8% | 65.1% |
| 4945821 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.57 | 48.0 | 3.99e-01 | 100.0% | 56.7% |
| 4003864 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.57 | 46.0 | 3.66e-01 | 95.8% | 77.3% |
| 5045502 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 49.0 | 4.05e-01 | 100.0% | 82.4% |
| 3810208 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 45.0 | 4.05e-01 | 95.8% | 66.2% |
| 3196095 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.55 | 47.0 | 2.99e-01 | 95.8% | 25.4% |
| 3423046 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.55 | 45.0 | 3.84e-01 | 95.8% | 57.3% |
| 3730037 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 38.0 | 3.70e-01 | 75.0% | 90.9% |
| 3662361 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 3.72e-01 | 93.8% | 56.0% |
| 5069811 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.51 | 38.0 | 2.42e-01 | 89.6% | 14.9% |
| 3893146 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.50 | 37.0 | 2.97e-01 | 89.6% | 40.0% |
| 3709207 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.50 | 43.0 | 2.70e-01 | 95.8% | 29.4% |