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AP014889.1__BAV81160.1__X__00009

Bact-Vir

AP014889.1__BAV81160.1__X__00009

Identity

Accession:
AP014889 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Vibrio_phage_VCPH

TaxID: 1674945

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-89
PDB
Domain cluster: rep: Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00342__D88-168
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.84 45.0 5.72e-01 100.0% 86.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 47.0 6.05e-01 97.6% 100.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.82 43.0 5.22e-01 100.0% 77.2%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 46.0 5.85e-01 100.0% 98.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 51.0 4.52e-01 100.0% 47.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 51.0 5.85e-01 100.0% 93.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 50.0 5.19e-01 100.0% 69.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.78 43.0 5.27e-01 100.0% 85.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 5.95e-01 100.0% 95.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 50.0 5.82e-01 100.0% 94.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 50.0 5.53e-01 100.0% 85.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 51.0 5.18e-01 100.0% 70.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 50.0 5.73e-01 100.0% 96.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 50.0 5.66e-01 100.0% 93.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 49.0 4.50e-01 100.0% 52.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.10e-01 100.0% 82.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 52.0 5.37e-01 100.0% 80.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.72 43.0 5.13e-01 95.2% 89.3%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 5.09e-01 100.0% 81.5%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 47.0 5.48e-01 98.8% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 44.0 4.91e-01 100.0% 78.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.14e-01 100.0% 79.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 48.0 5.21e-01 100.0% 86.6%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 49.0 5.40e-01 100.0% 93.8%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.59e-01 100.0% 93.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.80e-01 100.0% 76.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 49.0 5.14e-01 100.0% 86.5%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 46.0 4.81e-01 100.0% 79.2%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 36.0 4.09e-01 97.6% 79.4%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 54.0 4.60e-01 100.0% 93.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.01e-01 98.8% 78.5%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 47.0 3.79e-01 95.2% 88.9%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 44.0 3.77e-01 91.6% 85.2%
6x6uA01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.52 39.0 2.95e-01 81.9% 82.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.86e-01 89.2% 81.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.89 52.0 6.34e-01 100.0% 89.1%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 53.0 6.15e-01 100.0% 83.3%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 53.0 5.78e-01 100.0% 72.9%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.86 55.0 4.89e-01 100.0% 49.1%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.85 54.0 4.95e-01 100.0% 51.4%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 49.0 4.35e-01 100.0% 42.6%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.83 48.0 6.09e-01 98.8% 98.0%
3937478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 55.0 4.92e-01 100.0% 51.8%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 51.0 4.82e-01 100.0% 55.8%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.80 49.0 5.14e-01 100.0% 68.0%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 52.0 5.57e-01 100.0% 80.0%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 51.0 5.50e-01 100.0% 80.0%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 50.0 5.75e-01 98.8% 91.7%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 51.0 5.62e-01 100.0% 86.2%
3530134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 72.0 6.71e-01 100.0% 92.0%
3170397 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 50.0 5.12e-01 100.0% 70.0%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 52.0 5.63e-01 100.0% 84.3%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 49.0 5.44e-01 100.0% 86.2%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 49.0 4.50e-01 100.0% 52.8%
3245735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 4.44e-01 100.0% 51.3%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 48.0 4.61e-01 100.0% 61.1%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.71 47.0 4.86e-01 100.0% 71.2%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.70 47.0 4.43e-01 100.0% 57.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 55.0 5.28e-01 100.0% 72.6%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 5.05e-01 100.0% 84.6%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 47.0 4.75e-01 100.0% 68.2%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.20e-01 100.0% 74.4%
5044388 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 40.0 4.92e-01 92.8% 96.0%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.81e-01 100.0% 76.0%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.68 45.0 4.77e-01 100.0% 75.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 47.0 4.47e-01 100.0% 62.1%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 50.0 5.25e-01 100.0% 88.0%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.65 45.0 4.56e-01 100.0% 70.6%
3221547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.79e-01 100.0% 78.8%
3757490 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 47.0 4.53e-01 100.0% 73.7%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.04e-01 100.0% 86.7%
3473981 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 54.0 4.63e-01 100.0% 63.2%
3617677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.61e-01 98.8% 82.5%
4965032 375.1.1.343 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.60 37.0 4.38e-01 95.2% 94.5%
3937157 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.57 38.0 4.09e-01 97.6% 81.4%
3787175 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 48.0 4.10e-01 100.0% 63.2%
3930705 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.54 35.0 3.30e-01 100.0% 55.0%
3700460 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 4.05e-01 96.4% 78.4%
3482732 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.58e-01 94.0% 90.0%
4928888 316.1.1.13 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.52 44.0 3.37e-01 91.6% 55.8%
3493244 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 38.0 2.57e-01 96.4% 19.7%
3497893 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.32e-01 92.8% 58.9%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.51 44.0 3.96e-01 97.6% 83.3%
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.11e-01 100.0% 77.1%
3596826 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 4.02e-01 94.0% 98.0%
3598206 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.94e-01 96.4% 84.5%