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AP014889.1__BAV81175.1__X__00024

Bact-Vir

AP014889.1__BAV81175.1__X__00024

Identity

Accession:
AP014889 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.86 76.0 7.20e-01 96.2% 97.8%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.75 48.0 4.14e-01 94.9% 44.0%
2xq2A01 1.20.1730.10 Mainly Alpha › Up-down Bundle › Sodium/glucose cotransporter › Sodium/glucose cotransporter 0.68 49.0 2.93e-01 75.6% 43.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.68 47.0 5.12e-01 96.2% 90.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 47.0 4.80e-01 73.1% 85.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 47.0 4.09e-01 73.1% 82.1%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.64 47.0 3.99e-01 78.2% 52.7%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 46.0 4.17e-01 76.9% 81.7%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.63 49.0 4.99e-01 93.6% 83.3%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.62 53.0 4.41e-01 100.0% 59.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.62 43.0 4.33e-01 71.8% 77.9%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.62 40.0 3.76e-01 78.2% 52.5%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.61 44.0 4.37e-01 78.2% 71.1%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.20e-01 76.9% 72.1%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.61 51.0 4.88e-01 100.0% 79.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 44.0 3.97e-01 76.9% 84.4%
1a1vA03 1.10.820.10 Mainly Alpha › Orthogonal Bundle › RNA Helicase; Chain A, domain 3 › RNA Helicase Chain A , domain 3 0.60 51.0 3.97e-01 91.0% 95.7%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 45.0 4.53e-01 79.5% 96.1%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 44.0 4.00e-01 78.2% 81.3%
4k35A03 1.10.287.1170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase 0.60 42.0 4.41e-01 73.1% 82.9%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.58 41.0 3.45e-01 73.1% 91.1%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 43.0 4.34e-01 98.7% 77.5%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.58 49.0 4.81e-01 96.2% 93.0%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.58 52.0 4.38e-01 100.0% 71.3%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.57 48.0 4.82e-01 100.0% 94.9%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.57 49.0 4.00e-01 96.2% 90.1%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 36.0 3.54e-01 100.0% 58.1%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.57 39.0 4.20e-01 80.8% 87.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 39.0 3.80e-01 89.7% 63.6%
3ay8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 41.0 3.45e-01 78.2% 57.4%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 41.0 3.72e-01 79.5% 60.0%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 46.0 3.99e-01 100.0% 61.4%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 48.0 4.41e-01 100.0% 80.0%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 44.0 3.75e-01 100.0% 74.1%
3k3fA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.53 45.0 3.02e-01 98.7% 67.5%
6v3zA00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.52 44.0 3.49e-01 97.4% 59.6%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.52 44.0 4.22e-01 92.3% 81.8%
4atgA00 1.25.40.770 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain 0.52 42.0 3.17e-01 89.7% 55.4%
1s7bA00 1.10.3730.20 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.51 39.0 3.63e-01 85.9% 68.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742733 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.85 77.0 7.09e-01 98.7% 91.8%
4015513 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.83 75.0 6.02e-01 100.0% 60.7%
3386043 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.83 75.0 6.02e-01 98.7% 62.1%
4337422 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.82 72.0 5.59e-01 96.2% 53.0%
4579852 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.80 69.0 5.60e-01 96.2% 60.7%
3713731 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 3.52e-01 76.9% 49.6%
4048456 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.67 54.0 5.11e-01 92.3% 73.3%
4400977 604.34.1.0 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.67 56.0 5.43e-01 91.0% 85.9%
3187407 633.10.1.4 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF3429 0.66 56.0 4.27e-01 91.0% 87.6%
3211044 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.63 55.0 4.85e-01 100.0% 86.7%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 44.0 4.45e-01 80.8% 72.5%
3469719 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 44.0 4.14e-01 76.9% 60.0%
5071060 632.15.1.4 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.63 45.0 4.26e-01 93.6% 62.1%
5008556 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.62 46.0 4.55e-01 80.8% 85.9%
4670461 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.62 45.0 3.93e-01 93.6% 51.3%
4032867 601.1.1.11 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB 0.62 46.0 3.81e-01 79.5% 60.7%
5005597 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.61 47.0 3.91e-01 80.8% 88.9%
4181278 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.61 44.0 4.54e-01 98.7% 78.7%
4886450 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.61 44.0 4.42e-01 94.9% 73.8%
4667966 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 44.0 3.84e-01 97.4% 51.3%
4318044 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.59 44.0 4.20e-01 98.7% 67.8%
3323850 601.1.1.58 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FPP 0.59 44.0 4.48e-01 93.6% 81.3%
4009174 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 41.0 4.40e-01 100.0% 89.2%
4453799 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.59 44.0 2.78e-01 98.7% 15.3%
3595970 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 51.0 4.09e-01 98.7% 78.8%
5009683 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 50.0 4.04e-01 92.3% 52.1%
3501984 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.58 40.0 4.22e-01 100.0% 86.2%
5048701 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.58 45.0 4.40e-01 97.4% 76.5%
3036088 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 52.0 3.81e-01 97.4% 55.7%
3364607 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 38.0 3.72e-01 76.9% 64.7%
4842303 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 51.0 3.66e-01 97.4% 52.4%
4993688 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.56 50.0 4.68e-01 100.0% 80.0%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.56 40.0 3.21e-01 76.9% 98.2%
4999825 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.55 47.0 4.32e-01 98.7% 71.0%
3692483 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.55 47.0 3.78e-01 100.0% 62.9%
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.55 38.0 2.93e-01 70.5% 95.2%
3795822 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.53 41.0 3.90e-01 92.3% 71.1%
3394510 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.52 37.0 3.72e-01 97.4% 73.8%
3224742 3755.3.1.9 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 0.50 37.0 2.68e-01 78.2% 60.5%
D2 high residues 87-142
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.84 58.0 5.79e-01 71.4% 70.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.83 57.0 5.24e-01 71.4% 57.7%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.82 65.0 5.80e-01 83.9% 93.3%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.82 56.0 5.12e-01 71.4% 54.8%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.81 55.0 4.48e-01 71.4% 40.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.23e-01 100.0% 64.2%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.75 66.0 5.88e-01 100.0% 82.7%
1tt5B02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.74 58.0 5.27e-01 87.5% 80.5%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 5.33e-01 96.4% 80.2%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 59.0 5.89e-01 91.1% 91.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.72 60.0 5.82e-01 100.0% 82.8%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.29e-01 100.0% 84.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 54.0 5.30e-01 83.9% 88.7%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 53.0 3.64e-01 87.5% 81.9%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 58.0 3.73e-01 100.0% 20.6%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 53.0 4.03e-01 100.0% 34.7%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.96e-01 98.2% 83.9%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 57.0 5.27e-01 100.0% 78.7%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 51.0 3.67e-01 87.5% 78.3%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 58.0 4.81e-01 100.0% 67.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.56e-01 91.1% 66.7%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 56.0 4.03e-01 100.0% 53.4%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 52.0 4.76e-01 100.0% 66.7%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.65 41.0 4.17e-01 80.4% 64.3%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 53.0 4.82e-01 92.9% 92.3%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 53.0 3.94e-01 96.4% 42.1%
1ddbA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.65 55.0 3.87e-01 100.0% 31.8%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 50.0 4.59e-01 91.1% 92.4%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 41.0 3.61e-01 89.3% 46.8%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 54.0 4.59e-01 100.0% 76.5%
3id7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.60 42.0 2.52e-01 73.2% 17.9%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.34e-01 92.9% 87.2%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.59 41.0 3.96e-01 92.9% 64.1%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 38.0 3.84e-01 91.1% 66.1%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.58 44.0 4.46e-01 89.3% 96.5%
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.57 44.0 3.78e-01 91.1% 50.5%
1qqeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 45.0 2.91e-01 89.3% 38.1%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.57 45.0 4.17e-01 96.4% 86.1%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.56 46.0 3.88e-01 96.4% 54.8%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.55 46.0 3.72e-01 96.4% 74.4%
3mkrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 41.0 2.62e-01 82.1% 69.4%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.54 44.0 3.65e-01 92.9% 58.9%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 41.0 3.65e-01 89.3% 56.2%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 48.0 4.15e-01 100.0% 74.1%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 38.0 3.60e-01 78.6% 61.6%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 40.0 3.32e-01 83.9% 46.9%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.53 44.0 3.65e-01 96.4% 92.4%
1g03A00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 42.0 3.34e-01 96.4% 89.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 46.0 3.83e-01 100.0% 85.1%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 39.0 2.90e-01 87.5% 93.1%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 42.0 3.61e-01 94.6% 61.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839204 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.87 79.0 5.41e-01 100.0% 38.3%
3263465 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.87 63.0 5.55e-01 80.4% 53.8%
3944357 101.1.1.394 alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 0.83 74.0 6.43e-01 100.0% 65.9%
3450811 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.83 74.0 6.28e-01 100.0% 62.2%
3236724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 72.0 5.82e-01 100.0% 71.4%
5082325 3705.1.1.3 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.80 69.0 6.49e-01 100.0% 94.3%
5027755 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 6.11e-01 98.2% 70.0%
4943564 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.77 69.0 6.01e-01 100.0% 90.6%
3643664 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.77 64.0 5.82e-01 91.1% 78.7%
4963293 101.1.2.921 alpha arrays › HTH › HTH › winged helix domain › DUF7109 0.76 67.0 5.74e-01 100.0% 82.2%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.76 67.0 5.87e-01 100.0% 77.6%
4933997 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 66.0 5.18e-01 100.0% 66.7%
3254841 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.75 65.0 5.38e-01 100.0% 76.2%
4979490 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 65.0 5.13e-01 100.0% 67.5%
5036344 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.75 69.0 4.43e-01 100.0% 30.6%
3541829 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 66.0 5.28e-01 100.0% 73.6%
3411866 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.74 64.0 4.99e-01 100.0% 48.0%
4538372 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 62.0 6.03e-01 98.2% 89.2%
4983039 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 63.0 5.34e-01 100.0% 80.8%
5072225 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 6.15e-01 96.4% 95.0%
4962870 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 4.99e-01 100.0% 65.0%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.73 62.0 5.60e-01 100.0% 70.0%
4314672 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 62.0 5.15e-01 100.0% 71.4%
4937761 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 61.0 3.54e-01 100.0% 21.3%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 62.0 5.05e-01 100.0% 70.9%
4566245 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.71 54.0 3.66e-01 87.5% 79.1%
3357833 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.70 60.0 5.39e-01 100.0% 88.7%
4169937 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.69 59.0 5.04e-01 100.0% 85.3%
4983336 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 60.0 3.93e-01 100.0% 32.6%
3501406 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.68 57.0 4.45e-01 96.4% 83.2%
4640576 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.68 59.0 3.94e-01 100.0% 48.4%
4511876 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.68 59.0 4.38e-01 100.0% 48.0%
3277746 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.67 59.0 3.92e-01 100.0% 48.7%
5075868 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.67 56.0 5.25e-01 100.0% 75.7%
4377283 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.67 56.0 5.30e-01 100.0% 77.1%
3993627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.13e-01 92.9% 72.9%
3740778 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.19e-01 100.0% 100.0%
3881263 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.66 56.0 4.80e-01 100.0% 74.7%
5051738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.28e-01 100.0% 90.0%
4944011 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.65 55.0 4.77e-01 96.4% 87.8%
3650959 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.65 50.0 3.51e-01 98.2% 23.8%
3966335 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.64 54.0 3.70e-01 100.0% 49.6%
3522902 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.64 50.0 4.85e-01 91.1% 76.9%
None 0.64 53.0 3.61e-01 98.2% 44.6%
4037687 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.63 56.0 5.25e-01 100.0% 80.0%
4934877 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 52.0 3.87e-01 98.2% 77.0%
None 0.63 54.0 3.23e-01 98.2% 16.0%
4266291 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.63 51.0 4.60e-01 92.9% 65.0%
3782428 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.18e-01 98.2% 49.2%
3263340 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.62 54.0 5.07e-01 100.0% 87.1%
4379647 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.62 50.0 3.60e-01 91.1% 31.8%
3185860 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.62 49.0 4.71e-01 89.3% 76.9%
5035232 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 42.0 3.93e-01 91.1% 57.1%
3714843 592.6.1.0 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain 0.61 52.0 4.36e-01 100.0% 72.0%
4180990 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 46.0 4.09e-01 82.1% 88.7%
4065157 2005.1.1.25 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 0.60 49.0 3.00e-01 96.4% 50.5%
3929347 7579.1.1.70 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.59 51.0 3.20e-01 98.2% 48.8%
3503474 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.58 49.0 3.29e-01 100.0% 31.1%
3936396 109.4.1.1367 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 0.57 49.0 3.23e-01 100.0% 23.4%
4219490 2003.1.5.139 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11+Sterol_MT_C 0.56 45.0 2.91e-01 98.2% 18.0%
3591850 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.55 42.0 4.07e-01 83.9% 73.8%
4033427 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.55 44.0 4.23e-01 98.2% 82.9%