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AP014889.1__BAV81228.1__X__00077

Bact-Vir

AP014889.1__BAV81228.1__X__00077

Identity

Accession:
AP014889 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Vibrio_phage_VCPH

TaxID: 1674945

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Domain cluster: rep: aot2015-SM37_SRR1761715_Peru_trim_clean_trim_clean_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00252__D181-243
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 55.0 3.93e-01 100.0% 47.9%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.62 45.0 4.13e-01 77.8% 67.3%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.61 53.0 4.68e-01 98.8% 96.7%
1udxA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 48.0 3.78e-01 87.7% 96.6%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 49.0 4.49e-01 92.6% 97.3%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 41.0 3.29e-01 71.6% 53.5%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 44.0 3.97e-01 77.8% 97.3%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 49.0 4.52e-01 95.1% 98.2%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 49.0 4.49e-01 95.1% 98.2%
2e1qC05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.59 45.0 4.04e-01 82.7% 96.6%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.66e-01 100.0% 47.3%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 40.0 3.56e-01 71.6% 83.5%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 50.0 4.55e-01 98.8% 94.7%
1jy1A02 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.58 50.0 3.71e-01 100.0% 87.1%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 40.0 3.70e-01 72.8% 55.9%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.58 47.0 4.17e-01 90.1% 71.9%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 43.0 4.23e-01 82.7% 83.5%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 4.23e-01 80.2% 92.1%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 41.0 3.17e-01 80.2% 77.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.56 38.0 3.17e-01 71.6% 64.9%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 3.22e-01 75.3% 59.6%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 46.0 4.30e-01 97.5% 96.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 42.0 3.49e-01 81.5% 87.0%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.85e-01 77.8% 81.5%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.68e-01 81.5% 86.4%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 3.84e-01 70.4% 94.4%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 45.0 3.95e-01 98.8% 92.6%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.53 43.0 3.35e-01 92.6% 86.9%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.99e-01 76.5% 98.6%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 40.0 3.89e-01 84.0% 72.9%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.56e-01 75.3% 28.3%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.95e-01 79.0% 94.7%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 38.0 2.60e-01 76.5% 28.4%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 42.0 2.85e-01 93.8% 35.8%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 39.0 2.88e-01 87.7% 29.2%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.74e-01 98.8% 90.2%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.61e-01 92.6% 94.7%
2uz0A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.63e-01 77.8% 39.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263502 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.71 50.0 4.86e-01 85.2% 66.7%
4092079 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.66 56.0 3.52e-01 95.1% 45.4%
3185281 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.64 47.0 3.98e-01 81.5% 46.3%
5003069 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.64 54.0 4.24e-01 93.8% 78.9%
4552582 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.64 50.0 4.49e-01 85.2% 98.3%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 49.0 4.18e-01 85.2% 90.0%
3289567 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.62 51.0 4.42e-01 95.1% 60.7%
5059335 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.61 45.0 4.11e-01 77.8% 99.1%
3734654 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.61 45.0 3.96e-01 81.5% 52.0%
3587535 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.61 51.0 4.58e-01 97.5% 100.0%
3486509 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 4.06e-01 80.2% 90.4%
3580534 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 48.0 3.23e-01 86.4% 29.8%
4680089 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.59 45.0 3.19e-01 82.7% 50.6%
3176281 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.59 40.0 4.19e-01 71.6% 84.0%
3607857 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 42.0 3.97e-01 77.8% 77.0%
4997883 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.58 49.0 4.42e-01 100.0% 100.0%
3379360 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 48.0 2.93e-01 92.6% 19.8%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.57 39.0 3.66e-01 71.6% 80.0%
3179468 330.1.1.18 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 0.57 43.0 3.50e-01 81.5% 81.2%
3359773 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.57 43.0 2.85e-01 82.7% 53.9%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.57 48.0 3.17e-01 93.8% 32.0%
3929138 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.57 43.0 4.04e-01 81.5% 80.0%
24741 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.56 40.0 3.45e-01 74.1% 85.8%
3257321 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.56 41.0 3.72e-01 77.8% 80.9%
3679340 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 40.0 3.66e-01 77.8% 71.8%
4466411 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.55 40.0 3.22e-01 79.0% 65.7%
3388479 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.93e-01 90.1% 99.7%
3167247 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.95e-01 92.6% 40.8%
3993317 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 4.41e-01 95.1% 97.1%
3942598 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.54 39.0 2.99e-01 80.2% 77.0%
3889863 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 37.0 3.24e-01 70.4% 100.0%
None — 0.53 45.0 2.95e-01 93.8% 32.9%
3402554 632.7.1.64 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_C 0.53 40.0 3.64e-01 81.5% 95.5%
4545659 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 37.0 3.83e-01 75.3% 92.0%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.72e-01 76.5% 81.1%
5011595 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.52 43.0 3.76e-01 93.8% 80.8%
3742201 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 39.0 3.37e-01 82.7% 85.9%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.85e-01 87.7% 100.0%
3269021 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.44e-01 81.5% 89.1%
3993443 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 37.0 3.85e-01 79.0% 86.7%
4927406 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 38.0 2.76e-01 81.5% 45.5%
4954372 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 40.0 2.75e-01 85.2% 72.3%
5050353 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 39.0 3.37e-01 85.2% 78.5%
4996571 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.50 41.0 3.54e-01 92.6% 81.5%
3241230 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.50 38.0 2.83e-01 81.5% 52.3%