Back to structures

AP014889.1__BAV81280.1__X__00129

Bact-Vir

AP014889.1__BAV81280.1__X__00129

Identity

Accession:
AP014889 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30_93-123
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.31e-01 100.0% 77.5%
1g0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.18e-01 98.4% 65.5%
3lvtA05 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.63e-01 98.4% 92.2%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.43e-01 98.4% 74.7%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 3.94e-01 100.0% 58.4%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 2.99e-01 96.7% 35.3%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.14e-01 100.0% 70.5%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.93e-01 100.0% 63.6%
1pqzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.09e-01 100.0% 70.3%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.79e-01 100.0% 64.0%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.03e-01 98.4% 26.4%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 4.02e-01 100.0% 97.8%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.41e-01 100.0% 91.8%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.46e-01 100.0% 83.6%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.96e-01 100.0% 68.2%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.87e-01 100.0% 65.3%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.52 35.0 3.70e-01 100.0% 84.9%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.22e-01 78.7% 52.4%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.59e-01 98.4% 60.5%
8dkcB01 2.170.120.12 Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain 0.52 37.0 3.01e-01 77.0% 43.1%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.66e-01 100.0% 66.7%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.51e-01 100.0% 64.5%
6ezmA01 3.30.230.40 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 0.50 42.0 3.61e-01 100.0% 71.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488710 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.65 57.0 4.99e-01 98.4% 98.9%
3807365 11.1.5.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.63 54.0 4.76e-01 100.0% 84.2%
3552840 11.1.1.795 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.61 52.0 3.91e-01 100.0% 50.0%
3785358 11.1.1.182 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.59 51.0 4.08e-01 100.0% 63.1%
3274850 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.37e-01 100.0% 68.4%
3271538 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.28e-01 100.0% 65.5%
4942528 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.32e-01 100.0% 67.0%
4083039 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.15e-01 100.0% 69.6%
3335760 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.57 49.0 4.10e-01 100.0% 70.8%
3256938 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 50.0 4.14e-01 100.0% 98.2%
3598182 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.90e-01 100.0% 53.6%
5061215 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.57 48.0 4.08e-01 100.0% 69.1%
3519392 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.26e-01 100.0% 75.8%
3793689 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.56 45.0 3.87e-01 100.0% 53.3%
3672326 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.02e-01 100.0% 80.9%
4974351 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.05e-01 100.0% 68.0%
3277443 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.57e-01 100.0% 100.0%
3622477 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 39.0 2.73e-01 80.3% 98.0%
3264983 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.91e-01 100.0% 63.3%
3403103 11.1.1.196 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › N_BRCA1_IG 0.54 44.0 3.98e-01 100.0% 65.6%
3905151 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 45.0 3.66e-01 100.0% 49.2%
3913669 11.1.1.233 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.53 43.0 3.96e-01 100.0% 67.9%
4993821 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.92e-01 100.0% 69.9%
5023919 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.53 46.0 3.09e-01 98.4% 32.2%
3276927 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.52 46.0 4.31e-01 100.0% 100.0%
4939079 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.17e-01 100.0% 93.3%
3937489 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.51 45.0 3.95e-01 100.0% 71.1%
D2 medium residues 31-92
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.69 60.0 4.64e-01 100.0% 45.8%
1od3A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 59.0 4.63e-01 100.0% 49.6%
1iktA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.62 44.0 3.58e-01 74.2% 49.6%
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 4.05e-01 100.0% 43.3%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.91e-01 79.0% 48.5%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 3.97e-01 100.0% 43.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 45.0 3.12e-01 82.3% 30.5%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.23e-01 96.8% 59.1%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 45.0 4.16e-01 96.8% 62.5%
1pz4A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.59 44.0 3.66e-01 80.6% 53.1%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 4.24e-01 100.0% 62.4%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 35.0 2.55e-01 98.4% 21.3%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 48.0 3.38e-01 100.0% 31.0%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 3.87e-01 100.0% 73.0%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.56 40.0 3.73e-01 91.9% 61.3%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.56 39.0 3.47e-01 80.6% 47.9%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 47.0 4.06e-01 100.0% 57.9%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.61e-01 96.8% 44.2%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 45.0 3.33e-01 100.0% 43.1%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.54 47.0 3.39e-01 100.0% 95.9%
1y9kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 38.0 3.13e-01 74.2% 43.4%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.17e-01 75.8% 80.0%
7sz8A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 41.0 3.74e-01 96.8% 61.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.52 45.0 3.18e-01 98.4% 81.4%
7cymA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 37.0 3.43e-01 82.3% 57.5%
4iusA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 2.89e-01 96.8% 30.4%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.51 41.0 2.97e-01 100.0% 70.7%
1ypzF01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.41e-01 96.8% 66.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4300174 10.32.1.12 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.68 59.0 4.60e-01 100.0% 45.7%
3244769 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.63 43.0 3.79e-01 98.4% 48.9%
4031765 3535.1.1.1 a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.62 53.0 4.35e-01 100.0% 94.1%
1168355 11.1.5.48 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.61 50.0 3.96e-01 100.0% 42.8%
3909399 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.60 38.0 3.51e-01 100.0% 50.0%
3672678 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 41.0 3.77e-01 75.8% 50.6%
3454333 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.34e-01 96.8% 78.9%
4938639 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.50e-01 77.4% 69.3%
2048191 10.1.1.54 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase-like_CBM 0.58 49.0 3.54e-01 100.0% 48.3%
4302927 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.58 51.0 4.38e-01 98.4% 85.0%
4935483 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 42.0 3.58e-01 75.8% 62.1%
3476987 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 47.0 3.40e-01 100.0% 54.0%
4020672 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 42.0 2.67e-01 80.6% 79.7%
3917408 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.66e-01 85.5% 64.8%
3355666 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.55 44.0 2.83e-01 100.0% 31.6%
4856471 11.1.5.48 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.55 46.0 3.65e-01 98.4% 43.9%
3231485 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 45.0 3.48e-01 100.0% 63.7%
3253113 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.54 38.0 3.14e-01 75.8% 61.7%
3426700 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.30e-01 100.0% 95.0%
3717655 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.54 38.0 3.30e-01 75.8% 75.0%
3742004 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.53 37.0 3.01e-01 75.8% 68.8%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 41.0 3.79e-01 96.8% 66.3%
3915430 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.52 43.0 3.41e-01 100.0% 58.0%
3583844 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 37.0 2.81e-01 75.8% 69.3%
4962721 4139.1.1.1 a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.51 43.0 3.50e-01 100.0% 63.1%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 36.0 2.96e-01 75.8% 68.3%
3923731 220.1.1.35 beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.51 36.0 2.72e-01 75.8% 50.6%
4009022 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 2.88e-01 82.3% 76.8%