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AP014889.1__BAV81292.1__X__00141
Bact-VirAP014889.1__BAV81292.1__X__00141
Identity
- Accession:
- AP014889 ↗
- Kingdom:
- phage
Quality
52.3
mean pLDDT
Taxonomy
TaxID: 1674945
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 90-181
D2
medium
residues 244-320
D3
medium
residues 321-414
Domain cluster:
rep: IMGVR_UViG_3300021493_000084-3300021493-Ga0190306_10010524__D148-240
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 44.0 | 5.35e-01 | 96.8% | 91.4% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 39.0 | 4.86e-01 | 92.6% | 89.1% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 39.0 | 4.18e-01 | 86.2% | 70.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 43.0 | 4.47e-01 | 84.0% | 74.7% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.63 | 46.0 | 4.06e-01 | 77.7% | 100.0% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 39.0 | 3.38e-01 | 90.4% | 42.0% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.61 | 35.0 | 3.58e-01 | 72.3% | 57.6% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 40.0 | 4.30e-01 | 84.0% | 79.3% |
| 1ny9A00 | 1.10.490.50 | Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators | 0.59 | 37.0 | 3.71e-01 | 85.1% | 60.6% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 42.0 | 3.68e-01 | 80.9% | 50.0% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.58 | 39.0 | 3.97e-01 | 92.6% | 71.4% |
| 3ephA02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.58 | 35.0 | 3.84e-01 | 86.2% | 76.4% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 38.0 | 3.71e-01 | 100.0% | 61.1% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.56 | 48.0 | 4.05e-01 | 100.0% | 87.9% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 41.0 | 4.01e-01 | 84.0% | 69.9% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 37.0 | 4.14e-01 | 97.9% | 89.0% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.54 | 43.0 | 4.40e-01 | 100.0% | 87.9% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.52 | 41.0 | 3.83e-01 | 85.1% | 99.1% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.52 | 42.0 | 3.85e-01 | 98.9% | 66.4% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 44.0 | 4.30e-01 | 100.0% | 86.4% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.51 | 44.0 | 4.35e-01 | 97.9% | 91.3% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 39.0 | 3.13e-01 | 84.0% | 51.8% |
| 1dvkA00 | 1.20.940.10 | Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 | 0.50 | 44.0 | 3.83e-01 | 100.0% | 76.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285780 | 142.1.1.26 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Transgly_assoc | 0.66 | 45.0 | 4.87e-01 | 93.6% | 83.7% |
| 5075946 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.61 | 45.0 | 3.32e-01 | 76.6% | 73.5% |
| 4441062 | 3962.1.1.3 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › YtxK_like | 0.61 | 38.0 | 4.03e-01 | 87.2% | 70.6% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.60 | 42.0 | 4.39e-01 | 85.1% | 78.8% |
| 3656485 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.58 | 45.0 | 3.50e-01 | 85.1% | 64.4% |
| 5022961 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.58 | 45.0 | 3.59e-01 | 84.0% | 64.6% |
| 3603646 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.58 | 45.0 | 4.23e-01 | 85.1% | 67.0% |
| 4273301 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.57 | 33.0 | 3.66e-01 | 91.5% | 70.7% |
| 5020613 | 1075.5.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ | 0.57 | 44.0 | 3.32e-01 | 85.1% | 50.2% |
| 4026988 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 50.0 | 3.64e-01 | 100.0% | 43.5% |
| 3625755 | 5054.1.1.10 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › UNC-50 | 0.54 | 49.0 | 3.75e-01 | 100.0% | 44.2% |
| 3168331 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.54 | 34.0 | 3.75e-01 | 89.4% | 80.0% |
| 4019402 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 40.0 | 3.07e-01 | 80.9% | 49.3% |
| 4951139 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 41.0 | 4.04e-01 | 84.0% | 97.0% |
| 4974573 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.53 | 39.0 | 4.35e-01 | 96.8% | 97.3% |
| 1719256 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.52 | 40.0 | 3.10e-01 | 80.9% | 78.1% |
| 3610952 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.51 | 42.0 | 3.91e-01 | 95.7% | 69.6% |
| 3396771 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.51 | 42.0 | 2.93e-01 | 90.4% | 84.0% |
| 3785050 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.51 | 45.0 | 3.98e-01 | 100.0% | 75.0% |
D4
medium
residues 446-606
D5
medium
residues 607-678
D6
medium
residues 679-793
D7
medium
residues 824-938