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AP017903.1__BAX03434.1__X__00029
Bact-VirAP017903.1__BAX03434.1__X__00029
Identity
- Accession:
- AP017903 ↗
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Crassvirales›
Suoliviridae›
Dechshavirus›
Azobacteroides_phage_ProJPt-Bp1
TaxID: 1920526
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-55_221-258
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 45.0 | 4.60e-01 | 100.0% | 70.5% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 43.0 | 2.94e-01 | 100.0% | 20.1% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 42.0 | 3.84e-01 | 70.8% | 100.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 45.0 | 4.62e-01 | 100.0% | 81.6% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.59 | 39.0 | 3.99e-01 | 78.7% | 68.2% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 43.0 | 4.44e-01 | 100.0% | 81.2% |
| 5kf6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 44.0 | 3.17e-01 | 80.9% | 68.2% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 4.00e-01 | 100.0% | 73.8% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 49.0 | 3.56e-01 | 93.3% | 73.9% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 44.0 | 3.21e-01 | 84.3% | 59.7% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.55 | 40.0 | 2.87e-01 | 77.5% | 28.4% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 38.0 | 3.80e-01 | 98.9% | 69.1% |
| 3r31A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 43.0 | 3.12e-01 | 84.3% | 59.3% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.54 | 36.0 | 3.63e-01 | 78.7% | 66.3% |
| 4oh3A00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 40.0 | 2.49e-01 | 76.4% | 29.5% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 34.0 | 3.66e-01 | 91.0% | 77.5% |
| 2rjiA00 | 1.10.1740.170 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI | 0.54 | 36.0 | 3.66e-01 | 100.0% | 71.4% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 46.0 | 4.22e-01 | 100.0% | 97.6% |
| 1pkfA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 46.0 | 2.99e-01 | 98.9% | 43.7% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 37.0 | 3.88e-01 | 75.3% | 100.0% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 41.0 | 3.67e-01 | 88.8% | 78.0% |
| 2zy2A02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.51 | 36.0 | 3.15e-01 | 76.4% | 87.1% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 42.0 | 3.70e-01 | 92.1% | 87.4% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.51 | 42.0 | 3.86e-01 | 100.0% | 68.5% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.51 | 34.0 | 3.35e-01 | 98.9% | 63.9% |
| 6sl5601 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.50 | 36.0 | 3.05e-01 | 73.0% | 70.5% |
| 5z9iA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 38.0 | 2.52e-01 | 82.0% | 31.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4623581 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.60 | 41.0 | 3.97e-01 | 100.0% | 61.0% |
| 4159969 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.57 | 44.0 | 4.15e-01 | 97.8% | 68.6% |
| 3600098 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.57 | 45.0 | 2.99e-01 | 84.3% | 43.0% |
| 4969330 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.57 | 42.0 | 3.75e-01 | 78.7% | 82.9% |
| 4348000 | 563.2.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like › Cas_Cmr5 | 0.55 | 42.0 | 3.94e-01 | 88.8% | 64.3% |
| 3225717 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.55 | 45.0 | 3.72e-01 | 93.3% | 81.6% |
| 3722987 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.55 | 41.0 | 3.10e-01 | 78.7% | 69.0% |
| 3512862 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.54 | 38.0 | 2.81e-01 | 74.2% | 62.1% |
| 3323068 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.52 | 41.0 | 3.44e-01 | 89.9% | 80.0% |
| 5081190 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 37.0 | 3.16e-01 | 79.8% | 48.1% |
| 3974601 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.52 | 38.0 | 3.58e-01 | 77.5% | 71.8% |
| 4946466 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.52 | 39.0 | 2.64e-01 | 79.8% | 30.0% |
| 4076702 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.51 | 38.0 | 3.72e-01 | 100.0% | 70.0% |
| 5039383 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.50 | 45.0 | 3.25e-01 | 100.0% | 70.8% |
| 5065029 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 35.0 | 3.06e-01 | 78.7% | 48.9% |
D2
high
residues 85-217