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AP017924.1__BAW19032.1__X__00058
Bact-VirAP017924.1__BAW19032.1__X__00058
Identity
- Accession:
- AP017924 ↗
- Kingdom:
- phage
Quality
61.2
mean pLDDT
Taxonomy
TaxID: 1923889
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-140
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5b57B00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.64 | 49.0 | 3.35e-01 | 80.9% | 80.5% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 51.0 | 4.61e-01 | 85.1% | 90.6% |
| 3rfyA02 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.64 | 51.0 | 4.89e-01 | 85.1% | 97.2% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.64 | 49.0 | 4.61e-01 | 80.9% | 89.3% |
| 1aoaA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.62 | 47.0 | 4.39e-01 | 94.7% | 65.3% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 49.0 | 4.77e-01 | 86.2% | 89.5% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.60 | 42.0 | 3.67e-01 | 72.3% | 89.7% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 39.0 | 4.63e-01 | 94.7% | 100.0% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.52 | 40.0 | 3.89e-01 | 85.1% | 90.9% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 38.0 | 3.09e-01 | 79.8% | 58.1% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 35.0 | 3.53e-01 | 71.3% | 78.9% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 35.0 | 3.39e-01 | 72.3% | 74.3% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 37.0 | 2.98e-01 | 77.7% | 56.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3853606 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.63 | 47.0 | 4.32e-01 | 78.7% | 86.7% |
| 4625331 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.61 | 48.0 | 3.78e-01 | 86.2% | 75.2% |
| 3576992 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.56 | 37.0 | 3.74e-01 | 74.5% | 66.3% |
| 4154382 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.56 | 44.0 | 3.62e-01 | 84.0% | 81.5% |
| 3721147 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 41.0 | 3.47e-01 | 81.9% | 86.3% |
| 3598200 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 42.0 | 2.96e-01 | 89.4% | 98.7% |
| 3826 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.52 | 36.0 | 3.57e-01 | 72.3% | 97.0% |
| 3471776 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.52 | 42.0 | 3.40e-01 | 89.4% | 62.7% |
D2
high
residues 182-244
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5kA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.68 | 55.0 | 3.55e-01 | 87.3% | 95.1% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.64 | 47.0 | 3.44e-01 | 77.8% | 59.6% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.64 | 55.0 | 4.39e-01 | 100.0% | 49.3% |
| 3gdiA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 47.0 | 3.95e-01 | 79.4% | 66.7% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 43.0 | 4.22e-01 | 84.1% | 68.2% |
| 5llwA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 44.0 | 3.95e-01 | 79.4% | 59.8% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 45.0 | 4.09e-01 | 79.4% | 95.2% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.60 | 48.0 | 3.14e-01 | 87.3% | 93.0% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.59 | 46.0 | 3.92e-01 | 90.5% | 85.1% |
| 2xa7M01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 46.0 | 3.90e-01 | 93.7% | 89.2% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 47.0 | 4.23e-01 | 95.2% | 89.0% |
| 3laeA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.57 | 41.0 | 3.79e-01 | 77.8% | 70.4% |
| 3ffzA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 46.0 | 3.41e-01 | 93.7% | 65.7% |
| 2j3tC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 45.0 | 3.62e-01 | 95.2% | 83.7% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.56 | 42.0 | 4.29e-01 | 85.7% | 91.8% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.56 | 45.0 | 4.30e-01 | 95.2% | 89.5% |
| 5l2pA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 40.0 | 2.62e-01 | 77.8% | 34.6% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 44.0 | 3.49e-01 | 88.9% | 78.6% |
| 3nvoA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.55 | 45.0 | 3.66e-01 | 95.2% | 80.9% |
| 4p6zM01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 43.0 | 3.58e-01 | 90.5% | 53.7% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 38.0 | 3.40e-01 | 81.0% | 78.0% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 39.0 | 2.63e-01 | 81.0% | 65.0% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 40.0 | 3.05e-01 | 87.3% | 93.5% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.51 | 45.0 | 2.82e-01 | 100.0% | 91.3% |
| 6j5tB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 3.43e-01 | 92.1% | 90.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.50 | 39.0 | 2.99e-01 | 92.1% | 53.1% |
| 3u9sE04 | 3.30.700.40 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.50 | 41.0 | 3.39e-01 | 95.2% | 81.6% |
| 1efpB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 38.0 | 2.62e-01 | 84.1% | 32.1% |
| 2cn3A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.57e-01 | 88.9% | 88.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4042767 | 223.1.1.103 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 | 0.73 | 57.0 | 4.42e-01 | 84.1% | 42.2% |
| 3449739 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.72 | 60.0 | 3.72e-01 | 95.2% | 54.5% |
| 4944313 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.69 | 54.0 | 4.29e-01 | 87.3% | 48.9% |
| 3432113 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.68 | 56.0 | 4.45e-01 | 90.5% | 53.6% |
| 5028231 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 55.0 | 4.56e-01 | 90.5% | 81.4% |
| 4944923 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 52.0 | 4.26e-01 | 90.5% | 51.5% |
| 2887272 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.63 | 43.0 | 3.70e-01 | 71.4% | 67.0% |
| 5075279 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 47.0 | 4.01e-01 | 85.7% | 64.3% |
| 4943575 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 49.0 | 3.89e-01 | 90.5% | 61.4% |
| None | — | 0.62 | 49.0 | 2.81e-01 | 87.3% | 48.9% | |
| 3882038 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.62 | 48.0 | 3.77e-01 | 90.5% | 42.6% |
| 4436049 | 1190.1.1.1 ↗ | a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF | 0.61 | 48.0 | 4.23e-01 | 90.5% | 61.0% |
| 4836809 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.61 | 52.0 | 3.75e-01 | 95.2% | 43.0% |
| 5072525 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 47.0 | 3.95e-01 | 90.5% | 54.8% |
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.60 | 51.0 | 4.12e-01 | 100.0% | 49.6% |
| 5076535 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 47.0 | 3.86e-01 | 90.5% | 53.8% |
| 4976523 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 47.0 | 3.71e-01 | 87.3% | 55.0% |
| 5012156 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 51.0 | 4.59e-01 | 98.4% | 74.4% |
| 5047389 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 47.0 | 3.84e-01 | 90.5% | 50.8% |
| 4980097 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 48.0 | 3.91e-01 | 90.5% | 56.0% |
| 3884108 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.60 | 50.0 | 3.31e-01 | 95.2% | 29.6% |
| 5019907 | 5.1.5.233 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PD40 | 0.59 | 48.0 | 3.05e-01 | 87.3% | 78.7% |
| 3177235 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 46.0 | 3.71e-01 | 90.5% | 45.7% |
| 4945459 | 5.1.4.87 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD | 0.59 | 48.0 | 3.06e-01 | 88.9% | 93.3% |
| 4978284 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 49.0 | 4.04e-01 | 95.2% | 79.2% |
| 4970213 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 51.0 | 3.20e-01 | 96.8% | 95.5% |
| 4944469 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 46.0 | 3.82e-01 | 93.7% | 86.2% |
| 5053387 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 48.0 | 3.80e-01 | 95.2% | 65.7% |
| 3927766 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.57 | 46.0 | 3.58e-01 | 90.5% | 43.4% |
| 4988423 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.57 | 40.0 | 3.75e-01 | 73.0% | 83.7% |
| 3249304 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.57 | 44.0 | 3.42e-01 | 85.7% | 70.0% |
| 3169378 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.57 | 45.0 | 3.69e-01 | 95.2% | 80.7% |
| 3476370 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 45.0 | 3.65e-01 | 96.8% | 71.7% |
| 5050909 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 45.0 | 3.79e-01 | 98.4% | 90.8% |
| 5027681 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.56 | 44.0 | 3.04e-01 | 85.7% | 45.1% |
| 3938138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 45.0 | 3.52e-01 | 90.5% | 44.1% |
| 5001593 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 49.0 | 3.79e-01 | 100.0% | 75.0% |
| 5013018 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 46.0 | 3.71e-01 | 95.2% | 79.2% |
| 5000990 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.55 | 41.0 | 3.17e-01 | 84.1% | 65.8% |
| 5047178 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 43.0 | 3.54e-01 | 95.2% | 66.4% |
| 4950203 | 331.4.1.35 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 | 0.54 | 43.0 | 2.94e-01 | 88.9% | 40.9% |
| 3281945 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.54 | 38.0 | 3.46e-01 | 76.2% | 74.4% |
| 4370909 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.53 | 44.0 | 3.98e-01 | 95.2% | 74.4% |
| 4956062 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 38.0 | 3.20e-01 | 84.1% | 76.0% |
| 4113246 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.51 | 41.0 | 3.43e-01 | 100.0% | 72.6% |
| 1157731 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.51 | 40.0 | 3.69e-01 | 84.1% | 87.3% |
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.50 | 41.0 | 2.83e-01 | 92.1% | 34.2% |
| 3820172 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 43.0 | 2.73e-01 | 100.0% | 45.3% |