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AP017972.1__BAW98406.1__X__00197
Bact-VirAP017972.1__BAW98406.1__X__00197
Identity
- Accession:
- AP017972 ↗
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Taxonomy
TaxID: 1938577
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-60
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 53.0 | 4.44e-01 | 96.7% | 70.6% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.61 | 47.0 | 3.27e-01 | 83.3% | 53.1% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.60 | 45.0 | 3.66e-01 | 85.0% | 43.2% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.60 | 43.0 | 3.43e-01 | 78.3% | 36.8% |
| 1c3gA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.60 | 43.0 | 3.97e-01 | 91.7% | 59.0% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.59 | 41.0 | 2.84e-01 | 73.3% | 36.8% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.59 | 42.0 | 2.86e-01 | 78.3% | 92.2% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.59 | 50.0 | 4.20e-01 | 96.7% | 71.4% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 46.0 | 3.55e-01 | 88.3% | 52.5% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.15e-01 | 95.0% | 68.8% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.10e-01 | 98.3% | 66.3% |
| 1vzyA01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.57 | 47.0 | 3.28e-01 | 100.0% | 36.3% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 3.75e-01 | 95.0% | 72.4% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.55 | 43.0 | 3.48e-01 | 91.7% | 73.5% |
| 3voqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 38.0 | 3.07e-01 | 73.3% | 74.1% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 3.66e-01 | 78.3% | 97.5% |
| 1to6A02 | 3.90.1510.10 | Alpha Beta › Alpha-Beta Complex › Glycerate kinase, domain 2 › Glycerate kinase, domain 2 | 0.55 | 39.0 | 2.67e-01 | 75.0% | 84.3% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 2.86e-01 | 90.0% | 26.3% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.54 | 39.0 | 2.71e-01 | 80.0% | 61.9% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 41.0 | 3.22e-01 | 81.7% | 52.3% |
| 3u83A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.74e-01 | 91.7% | 65.3% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 45.0 | 3.75e-01 | 100.0% | 59.8% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.54e-01 | 85.0% | 78.4% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 2.42e-01 | 78.3% | 63.9% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 37.0 | 2.53e-01 | 73.3% | 41.3% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 41.0 | 2.68e-01 | 86.7% | 23.5% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 2.98e-01 | 71.7% | 51.4% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 40.0 | 3.13e-01 | 95.0% | 38.2% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 37.0 | 3.19e-01 | 78.3% | 53.9% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 41.0 | 3.77e-01 | 93.3% | 68.7% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.55e-01 | 90.0% | 69.2% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 3.12e-01 | 81.7% | 68.5% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.49e-01 | 100.0% | 60.5% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 38.0 | 2.82e-01 | 81.7% | 39.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.74 | 57.0 | 4.64e-01 | 90.0% | 45.5% |
| 1893038 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.66 | 47.0 | 4.78e-01 | 91.7% | 76.7% |
| 3910966 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.66 | 47.0 | 3.59e-01 | 76.7% | 54.5% |
| 3890428 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.66 | 46.0 | 3.26e-01 | 75.0% | 24.4% |
| 4399128 | 7581.1.1.30 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C | 0.64 | 51.0 | 3.12e-01 | 88.3% | 84.6% |
| 3469919 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.63 | 46.0 | 4.31e-01 | 78.3% | 65.3% |
| 3887913 | 223.2.1.40 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN | 0.62 | 46.0 | 3.48e-01 | 91.7% | 31.6% |
| 4433789 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.61 | 43.0 | 2.81e-01 | 75.0% | 28.8% |
| 4969129 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 50.0 | 4.23e-01 | 96.7% | 65.7% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 43.0 | 3.46e-01 | 78.3% | 80.0% |
| 4890002 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 47.0 | 3.52e-01 | 91.7% | 83.1% |
| 3613007 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.56 | 40.0 | 3.68e-01 | 91.7% | 57.5% |
| 4973552 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 42.0 | 3.70e-01 | 90.0% | 57.1% |
| 3422000 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.55 | 49.0 | 4.09e-01 | 100.0% | 59.0% |
| 3899230 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 38.0 | 3.30e-01 | 95.0% | 44.0% |
| 5048392 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.55 | 38.0 | 2.51e-01 | 73.3% | 69.1% |
| 3906518 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.57e-01 | 95.0% | 94.8% |
| 3627810 | 3246.1.1.1 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR | 0.54 | 43.0 | 3.47e-01 | 93.3% | 60.7% |
| 3798696 | 3246.1.1.0 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins | 0.54 | 43.0 | 3.45e-01 | 93.3% | 60.0% |
| 3932950 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.62e-01 | 88.3% | 26.1% |
| 3450430 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 3.04e-01 | 86.7% | 50.9% |
| 3743393 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.54 | 42.0 | 2.59e-01 | 88.3% | 29.4% |
| 5010647 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.53 | 42.0 | 2.98e-01 | 93.3% | 68.9% |
| 3268156 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.52 | 42.0 | 3.02e-01 | 90.0% | 35.7% |
| 5061581 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 39.0 | 3.28e-01 | 96.7% | 45.5% |
| 3615577 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.52 | 36.0 | 2.43e-01 | 76.7% | 81.4% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.52 | 35.0 | 2.49e-01 | 73.3% | 24.0% |
| 3481442 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.52 | 42.0 | 3.92e-01 | 95.0% | 88.7% |
| 3367574 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 44.0 | 3.16e-01 | 100.0% | 64.1% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.51 | 37.0 | 2.74e-01 | 80.0% | 62.8% |
| 4233683 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.51 | 35.0 | 2.47e-01 | 73.3% | 59.5% |
| 4234844 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.51 | 38.0 | 2.71e-01 | 90.0% | 94.3% |
| 5039496 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.50 | 34.0 | 2.99e-01 | 70.0% | 56.7% |
| 3394803 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 39.0 | 2.96e-01 | 91.7% | 65.7% |
| 3303720 | 3336.1.1.1 ↗ | alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE | 0.50 | 34.0 | 2.15e-01 | 71.7% | 51.3% |