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AP018375.1__BBC69462.1__phiSA039_0003__00003

Bact-Vir

AP018375.1__BBC69462.1__phiSA039_0003__00003

Identity

Accession:
AP018375 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kayvirus› Staphylococcus_phage_phiSA039

TaxID: 2028134

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 3.84e-01 100.0% 43.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939691 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.57 39.0 3.28e-01 73.1% 40.0%
3222762 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 33.0 2.93e-01 73.1% 35.0%
3728855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.80e-01 96.2% 64.0%
5004301 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.51 37.0 2.37e-01 100.0% 14.7%
3938624 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.51 43.0 3.31e-01 94.2% 47.0%
3675122 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.50 38.0 2.53e-01 92.3% 70.2%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 36.0 3.13e-01 80.8% 55.6%