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AP018399.1__BBA65335.1__X__00187

Bact-Vir

AP018399.1__BBA65335.1__X__00187

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-91
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 44.0 5.37e-01 81.9% 96.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.70 42.0 4.40e-01 77.1% 64.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 4.78e-01 74.7% 82.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.28e-01 78.3% 56.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.90e-01 80.7% 81.6%
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 3.94e-01 74.7% 71.4%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 43.0 3.91e-01 73.5% 90.0%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.05e-01 75.9% 82.2%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.59 40.0 3.22e-01 71.1% 42.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.57 39.0 3.56e-01 77.1% 54.1%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 38.0 2.72e-01 71.1% 83.3%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.05e-01 81.9% 98.8%
7jptA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 37.0 3.16e-01 74.7% 86.2%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 35.0 3.05e-01 71.1% 50.8%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 38.0 3.79e-01 79.5% 75.9%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.84e-01 77.1% 81.8%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 2.54e-01 71.1% 82.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617889 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 4.87e-01 75.9% 92.9%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.67 49.0 4.98e-01 75.9% 81.2%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.27e-01 77.1% 67.6%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 40.0 3.67e-01 79.5% 50.5%
395 2.2.1.7 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S4-tox 0.61 43.0 3.91e-01 73.5% 90.9%
3189631 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 3.58e-01 73.5% 69.2%
3222288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.62e-01 73.5% 86.1%
3251426 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 39.0 4.10e-01 72.3% 100.0%
3782925 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 3.89e-01 74.7% 73.7%
3404065 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 39.0 4.01e-01 74.7% 93.8%
4275948 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.54 39.0 3.56e-01 78.3% 69.2%
4022793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.20e-01 75.9% 86.8%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 39.0 4.05e-01 77.1% 84.4%
5031452 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 36.0 3.46e-01 72.3% 76.8%