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AP018399.1__BBA65341.1__X__00193

Bact-Vir

AP018399.1__BBA65341.1__X__00193

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

96.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (69 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-13_69-189
PDB
Domain cluster: rep: aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00245__D4-169
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xrpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.87 66.0 6.72e-01 78.6% 99.2%
3l8hA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.85 80.0 7.15e-01 100.0% 96.6%
2om6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.82 78.0 7.39e-01 100.0% 93.5%
3kbbA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.80 75.0 7.30e-01 100.0% 97.9%
3qnmA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.80 75.0 7.33e-01 100.0% 95.7%
3ed5A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.79 74.0 7.14e-01 100.0% 92.5%
2gfhA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.79 74.0 6.88e-01 100.0% 86.3%
2fi1A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.79 67.0 6.97e-01 100.0% 95.1%
2p11A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.79 74.0 7.14e-01 100.0% 92.4%
6f2xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 73.0 6.90e-01 100.0% 94.0%
3m1yC01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 73.0 7.01e-01 100.0% 95.9%
2g07A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 71.0 6.25e-01 100.0% 77.0%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 72.0 7.08e-01 100.0% 94.9%
3q3eA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.75 69.0 6.03e-01 100.0% 74.3%
3gdgA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.74 68.0 5.33e-01 100.0% 83.5%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.73 70.0 6.42e-01 100.0% 90.7%
6lfnA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 67.0 5.24e-01 100.0% 99.6%
5djsA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 66.0 6.06e-01 100.0% 85.1%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.71 65.0 6.21e-01 100.0% 98.0%
3i6iA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 65.0 5.76e-01 100.0% 85.4%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 55.0 5.38e-01 81.7% 97.9%
1up7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 60.0 5.91e-01 93.1% 97.8%
7va8A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.69 63.0 5.00e-01 100.0% 98.9%
2r6hA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.68 50.0 5.21e-01 74.8% 100.0%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.68 56.0 5.59e-01 88.5% 91.9%
3wisA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.68 62.0 5.59e-01 100.0% 93.3%
2f9fA00 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 61.0 5.67e-01 100.0% 78.3%
1rzuA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.66 60.0 5.15e-01 100.0% 68.9%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 57.0 5.62e-01 94.7% 100.0%
4krgA02 3.40.50.12180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 58.0 5.04e-01 98.5% 81.5%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 57.0 5.56e-01 94.7% 99.3%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 56.0 5.63e-01 95.4% 93.8%
3nd5A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 51.0 4.91e-01 96.9% 75.0%
2f8lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 57.0 4.69e-01 100.0% 85.9%
5ul3A01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.63 58.0 5.45e-01 100.0% 82.7%
6xl1A01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.63 55.0 5.27e-01 96.9% 90.3%
1k92A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 54.0 5.10e-01 97.7% 76.9%
3sy8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 49.0 4.89e-01 84.0% 94.1%
3lkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 56.0 4.42e-01 100.0% 78.7%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 52.0 4.11e-01 90.1% 82.3%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 55.0 5.44e-01 96.9% 92.8%
3uwpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 4.60e-01 97.7% 71.4%
3c5hA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 56.0 4.61e-01 100.0% 92.7%
3c6kB03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 4.84e-01 98.5% 85.0%
4hg2B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 5.00e-01 97.7% 82.7%
4mp8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 52.0 4.80e-01 95.4% 97.1%
2atcA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.60 55.0 5.26e-01 100.0% 85.6%
7ympE01 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.60 50.0 3.96e-01 90.8% 93.2%
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 54.0 4.58e-01 100.0% 99.5%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 49.0 4.02e-01 89.3% 89.9%
4evwA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 52.0 4.25e-01 95.4% 93.8%
7uuim01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 4.75e-01 92.4% 90.5%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.59 33.0 3.95e-01 83.2% 84.1%
3h05B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 50.0 4.66e-01 96.9% 74.2%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.59 53.0 4.67e-01 100.0% 88.8%
3n4fA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.58 48.0 3.86e-01 90.1% 77.6%
1h3fA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 50.0 4.44e-01 96.9% 84.1%
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.57 51.0 4.81e-01 100.0% 94.4%
3k32B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 50.0 4.39e-01 97.7% 68.4%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 49.0 4.47e-01 96.9% 71.3%
1x7oA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 51.0 4.69e-01 100.0% 85.1%
5x4kA01 3.90.1640.30 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › 0.56 46.0 4.11e-01 90.8% 73.0%
2i6dA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 51.0 4.83e-01 100.0% 89.2%
7zvjA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 49.0 4.01e-01 98.5% 91.6%
3c4aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 50.0 4.24e-01 100.0% 72.2%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 48.0 4.11e-01 95.4% 92.5%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 49.0 3.88e-01 98.5% 85.8%
7bmfA01 3.90.1640.30 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › 0.54 45.0 4.07e-01 90.8% 73.5%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.73e-01 74.8% 94.8%
1xr4A02 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.54 46.0 3.71e-01 96.2% 78.1%
3klbA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 47.0 4.42e-01 100.0% 93.2%
2hnhA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 47.0 3.72e-01 100.0% 89.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992093 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.87 66.0 6.29e-01 78.6% 93.3%
4319375 2006.1.1.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.86 83.0 7.07e-01 100.0% 91.3%
4038162 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.86 83.0 7.21e-01 100.0% 95.7%
5075956 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.83 78.0 6.26e-01 99.2% 97.4%
5039917 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.82 79.0 6.66e-01 100.0% 90.5%
4971107 2006.1.1.17 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_6 0.81 77.0 7.48e-01 100.0% 95.8%
5055658 2006.1.1.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.80 76.0 6.61e-01 100.0% 96.3%
3839145 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.78 73.0 6.06e-01 100.0% 97.3%
4956037 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.77 70.0 6.51e-01 95.4% 98.1%
4974196 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.76 66.0 6.54e-01 98.5% 88.9%
3427982 2006.1.1.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PF28688 0.75 70.0 6.69e-01 100.0% 95.3%
5057911 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.75 71.0 6.93e-01 100.0% 97.1%
3502769 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.75 69.0 6.76e-01 96.9% 100.0%
4949999 7512.1.1.13 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans 0.73 67.0 5.71e-01 100.0% 72.9%
4399680 7512.1.1.33 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.72 66.0 4.59e-01 100.0% 34.2%
1698349 7512.1.1.33 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.72 66.0 5.60e-01 100.0% 68.6%
5037052 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.71 63.0 5.53e-01 96.9% 88.2%
3723797 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.70 64.0 4.48e-01 100.0% 87.7%
4963596 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.70 64.0 5.69e-01 100.0% 71.4%
3307296 7512.1.1.33 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.70 59.0 5.61e-01 90.8% 79.9%
4977828 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.70 64.0 5.68e-01 100.0% 77.8%
5051201 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 64.0 5.66e-01 100.0% 97.3%
4963305 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.69 55.0 5.48e-01 84.7% 94.7%
5059471 7512.1.1.32 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.68 62.0 5.20e-01 100.0% 70.9%
4939526 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.68 52.0 5.41e-01 80.2% 94.9%
3345642 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.68 62.0 5.74e-01 100.0% 88.4%
3292891 2003.1.5.121 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.68 62.0 5.25e-01 100.0% 62.9%
4944109 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.67 52.0 5.34e-01 81.7% 96.8%
4989954 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.67 54.0 5.28e-01 98.5% 79.3%
4948232 7564.1.1.1 ↗ a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.67 62.0 5.53e-01 100.0% 93.9%
4965730 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.67 56.0 5.65e-01 95.4% 89.2%
5011292 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.66 60.0 5.55e-01 100.0% 78.8%
3838647 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.66 52.0 4.64e-01 100.0% 58.4%
5071913 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.65 58.0 4.55e-01 98.5% 73.7%
1888054 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.65 59.0 4.97e-01 100.0% 89.1%
4055336 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.65 58.0 4.85e-01 98.5% 68.6%
3958801 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.64 52.0 5.08e-01 100.0% 80.7%
3587108 2005.1.1.72 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30635 0.64 57.0 5.59e-01 96.2% 94.3%
3584468 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.63 57.0 4.85e-01 96.2% 83.9%
3511998 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.63 54.0 4.84e-01 93.1% 90.3%
3416819 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.63 53.0 4.94e-01 92.4% 97.1%
1548119 2003.1.5.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.63 58.0 4.73e-01 100.0% 87.0%
3605597 2007.1.2.27 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase 0.63 54.0 5.37e-01 94.7% 100.0%
4615885 2004.1.1.422 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase 0.63 57.0 4.70e-01 99.2% 63.4%
3276002 2003.4.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes 0.63 44.0 3.93e-01 98.5% 51.7%
2717225 7592.1.1.8 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 0.63 55.0 5.21e-01 96.9% 87.5%
None — 0.63 56.0 5.11e-01 97.7% 84.6%
5077342 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.62 53.0 5.21e-01 91.6% 97.9%
3592491 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 52.0 5.42e-01 94.7% 99.2%
2876014 2006.1.2.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.61 51.0 4.56e-01 100.0% 63.1%
4138362 2004.1.1.491 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, RsgA_GTPase 0.61 55.0 4.52e-01 99.2% 55.0%
3482939 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 55.0 4.47e-01 100.0% 56.2%
4159149 2004.1.1.96 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RsgA_GTPase 0.61 54.0 4.56e-01 98.5% 66.2%
3727989 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.60 50.0 3.79e-01 89.3% 80.3%
None — 0.60 53.0 4.45e-01 97.7% 97.8%
4023253 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.60 52.0 3.63e-01 95.4% 52.3%
3284154 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 48.0 3.89e-01 87.8% 88.7%
4566699 2004.1.1.422 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase 0.59 53.0 4.22e-01 99.2% 55.6%
4954825 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 52.0 4.27e-01 96.2% 65.0%
1275997 2003.1.14.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace 0.59 53.0 4.48e-01 100.0% 78.5%
4946723 7592.1.1.13 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csm6_6H 0.59 52.0 5.04e-01 98.5% 96.0%
3953487 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 48.0 3.92e-01 89.3% 82.7%
5059976 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.58 48.0 4.98e-01 100.0% 97.5%
4954088 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.58 50.0 3.95e-01 96.2% 78.6%
4957472 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.57 49.0 3.77e-01 96.2% 60.6%
4998316 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.57 50.0 4.14e-01 95.4% 86.3%
None — 0.57 50.0 4.22e-01 96.9% 79.5%
4308342 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.57 50.0 4.30e-01 96.9% 77.1%
4601377 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.57 50.0 4.19e-01 96.9% 75.1%
5033806 2003.1.7.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.56 50.0 4.04e-01 100.0% 71.2%
None — 0.56 49.0 4.28e-01 96.9% 83.0%
4536847 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.56 49.0 4.22e-01 97.7% 73.5%
3990064 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 47.0 4.28e-01 92.4% 90.5%
5016799 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 48.0 4.03e-01 95.4% 87.4%
5025418 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 48.0 4.00e-01 95.4% 87.2%
4954086 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 47.0 3.63e-01 95.4% 63.8%
4954509 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 48.0 4.10e-01 95.4% 92.4%
None — 0.51 39.0 3.87e-01 83.2% 74.5%
D2 high residues 16-67
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jarA02 1.10.40.40 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Deoxyribonucleotidase; domain 2 0.63 51.0 5.11e-01 96.2% 100.0%
4h2wC00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.61 45.0 4.11e-01 100.0% 57.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.96e-01 84.6% 79.8%
3vkhB01 1.10.287.2620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 47.0 4.52e-01 100.0% 78.1%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 49.0 4.30e-01 100.0% 81.9%
5czdB00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 41.0 3.82e-01 100.0% 58.4%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.56 47.0 3.30e-01 100.0% 81.5%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.68e-01 86.5% 62.9%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 42.0 3.82e-01 100.0% 58.0%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.57e-01 84.6% 68.5%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.73e-01 86.5% 79.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.82e-01 84.6% 67.2%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.14e-01 86.5% 34.8%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 46.0 3.86e-01 98.1% 71.1%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.88e-01 86.5% 95.2%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.55e-01 80.8% 91.7%
4mk6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 2.80e-01 84.6% 51.6%
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 39.0 3.98e-01 80.8% 98.0%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 36.0 3.15e-01 86.5% 46.5%
3dkxA02 1.10.10.1480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Plasmid replication protein 0.50 39.0 3.55e-01 84.6% 85.3%
2hpiA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 41.0 2.65e-01 92.3% 81.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4319375 2006.1.1.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.70 58.0 4.04e-01 100.0% 29.7%
4160431 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.70 58.0 4.05e-01 100.0% 30.1%
4060271 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.62 52.0 4.49e-01 96.2% 83.5%
4390114 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.61 49.0 4.49e-01 94.2% 65.3%
3534672 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 40.0 3.39e-01 71.2% 65.0%
4946711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.48e-01 88.5% 84.6%
3519321 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 41.0 4.45e-01 78.8% 97.5%
3789226 377.1.1.10 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap 0.57 39.0 2.57e-01 71.2% 71.2%
4578986 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 4.01e-01 78.8% 80.0%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.57 41.0 2.91e-01 78.8% 28.0%
4949987 101.1.2.674 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29648 0.56 42.0 4.35e-01 82.7% 94.0%
4033964 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.79e-01 88.5% 67.1%
3962226 101.1.2.104 ↗ alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3 0.56 41.0 3.17e-01 80.8% 44.8%
3923654 101.1.1.356 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.55 42.0 4.03e-01 84.6% 71.7%
4974616 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 41.0 3.96e-01 80.8% 88.3%
4998376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.85e-01 80.8% 92.2%
4954772 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 42.0 4.15e-01 86.5% 87.3%
4034117 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.54 40.0 3.53e-01 84.6% 58.8%
3244751 101.1.2.461 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 0.54 45.0 3.65e-01 96.2% 96.2%
5067395 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.54 40.0 3.58e-01 84.6% 56.2%
3216704 102.1.1.77 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › TNK-like_SAM 0.54 41.0 3.93e-01 92.3% 100.0%
4998981 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.54e-01 86.5% 54.1%
3182290 174.1.1.4 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 0.53 39.0 3.04e-01 82.7% 96.9%
3958171 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 41.0 3.82e-01 84.6% 76.9%
4974766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.62e-01 86.5% 68.0%
4402403 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.53 41.0 3.74e-01 84.6% 68.6%
1103020 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.53 40.0 3.63e-01 84.6% 69.4%
4954539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 4.04e-01 84.6% 88.0%
3987741 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.52 39.0 3.46e-01 84.6% 62.5%
4977918 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.51 38.0 3.21e-01 80.8% 60.0%
4031837 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.51 39.0 3.53e-01 86.5% 64.0%
5072420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.99e-01 86.5% 94.0%