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AP018399.1__BBA65359.1__X__00211

Bact-Vir

AP018399.1__BBA65359.1__X__00211

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-40_111-181
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 40.0 3.32e-01 79.8% 35.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.10e-01 72.7% 73.8%
4p72A03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.54 42.0 3.43e-01 84.8% 88.9%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 2.88e-01 70.7% 76.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 37.0 3.16e-01 72.7% 83.7%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 41.0 4.06e-01 91.9% 82.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 36.0 4.39e-01 71.7% 75.4%
4432988 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.56 44.0 3.49e-01 84.8% 82.9%
4649321 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.55 44.0 3.51e-01 84.8% 87.5%
4380331 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.55 35.0 4.00e-01 70.7% 90.0%
4257113 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.54 34.0 3.96e-01 71.7% 91.4%
4400641 4.1.1.397 ↗ beta barrels › SH3 › SH3 › SH3 › PF29622 0.53 36.0 4.03e-01 70.7% 93.8%
3517030 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.53 37.0 4.17e-01 77.8% 94.7%
1115776 295.1.1.5 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.53 37.0 3.07e-01 73.7% 76.4%
4401263 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.52 42.0 3.33e-01 86.9% 81.9%
3233877 389.1.2.3 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › DUF282 0.52 38.0 3.74e-01 76.8% 86.1%
D2 medium residues 41-110
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 31.0 4.31e-01 70.0% 85.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 37.0 4.19e-01 98.6% 78.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 34.0 3.90e-01 98.6% 74.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 37.0 3.56e-01 95.7% 51.2%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 50.0 4.11e-01 94.3% 50.4%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 49.0 3.32e-01 97.1% 81.5%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 3.35e-01 94.3% 33.1%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.41e-01 94.3% 37.0%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.40e-01 94.3% 36.6%
2vqaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.32e-01 94.3% 33.9%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 32.0 3.55e-01 100.0% 69.0%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 44.0 3.64e-01 92.9% 48.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.65e-01 95.7% 50.0%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.17e-01 94.3% 32.4%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.13e-01 94.3% 33.1%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.54e-01 94.3% 57.9%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.89e-01 100.0% 65.3%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.92e-01 98.6% 86.6%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.52 45.0 3.01e-01 97.1% 46.8%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 3.41e-01 100.0% 69.2%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 2.98e-01 95.7% 70.6%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 37.0 3.10e-01 78.6% 92.2%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.51 40.0 3.31e-01 87.1% 87.8%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.13e-01 97.1% 61.0%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.27e-01 98.6% 67.2%
1gqgC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 43.0 3.19e-01 97.1% 68.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4064452 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.73 45.0 3.49e-01 91.4% 30.0%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 37.0 3.85e-01 75.7% 55.4%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.67 39.0 3.68e-01 95.7% 47.1%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 38.0 3.84e-01 97.1% 58.6%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 36.0 3.65e-01 97.1% 55.7%
4536849 10.12.1.146 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 0.61 51.0 3.23e-01 95.7% 66.1%
4962366 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 48.0 4.09e-01 95.7% 52.2%
4228039 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.61 51.0 3.22e-01 97.1% 69.3%
3650101 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.59 49.0 3.04e-01 97.1% 67.8%
3833339 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.58 46.0 3.47e-01 94.3% 34.9%
2157748 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 44.0 3.44e-01 95.7% 38.0%
3453800 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.58 46.0 3.02e-01 95.7% 20.7%
3747717 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.58 46.0 3.11e-01 94.3% 23.5%
3723454 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 45.0 3.46e-01 94.3% 37.5%
4588060 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 44.0 3.14e-01 94.3% 27.4%
3658091 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 44.0 3.23e-01 94.3% 30.0%
4991564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 47.0 3.74e-01 95.7% 67.7%
None — 0.57 44.0 3.18e-01 94.3% 29.5%
3371040 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 45.0 3.40e-01 95.7% 35.9%
3700085 10.12.1.15 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.57 45.0 3.32e-01 94.3% 33.0%
3833580 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 48.0 3.43e-01 97.1% 76.4%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 43.0 4.24e-01 95.7% 76.0%
3971408 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 48.0 3.70e-01 98.6% 74.7%
1280198 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 44.0 3.23e-01 94.3% 30.9%
3371935 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 45.0 3.27e-01 94.3% 32.1%
3798341 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 41.0 2.91e-01 92.9% 25.1%
3969117 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.56 48.0 3.64e-01 97.1% 67.4%
3958252 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 43.0 3.52e-01 92.9% 44.0%
3655985 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 44.0 3.67e-01 94.3% 48.8%
3820862 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 43.0 3.14e-01 94.3% 29.3%
3363456 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 43.0 3.62e-01 94.3% 48.0%
3312880 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 43.0 3.17e-01 95.7% 30.8%
4014171 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 41.0 3.01e-01 92.9% 29.2%
None — 0.55 42.0 3.12e-01 94.3% 30.8%
4662228 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 43.0 3.54e-01 95.7% 46.9%
1877169 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 43.0 3.18e-01 97.1% 33.2%
3280091 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 44.0 3.28e-01 97.1% 56.5%
3282947 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 42.0 3.81e-01 98.6% 63.0%
3284651 10.12.1.29 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.52 44.0 3.31e-01 94.3% 81.7%
3900148 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 43.0 3.31e-01 95.7% 69.4%
3536626 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 43.0 3.22e-01 98.6% 61.0%
3275342 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.52 38.0 3.32e-01 97.1% 49.6%
3595338 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 44.0 3.13e-01 94.3% 42.9%
2325643 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 39.0 3.23e-01 97.1% 43.7%
3624307 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.47e-01 84.3% 82.7%
3467072 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 43.0 3.16e-01 95.7% 79.5%
4034291 9.19.1.1 ↗ beta barrels › Lipocalins/Streptavidin › hypothetical protein SAV1798 › hypothetical protein SAV1798 › DUF4909 0.51 39.0 3.22e-01 84.3% 86.9%
3492248 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.82e-01 95.7% 69.5%
3587405 10.32.1.285 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › RodZ_C 0.50 39.0 3.56e-01 97.1% 62.6%