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AP018399.1__BBA65367.1__X__00219

Bact-Vir

AP018399.1__BBA65367.1__X__00219

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-109
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.69 51.0 4.47e-01 90.0% 52.1%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.68 47.0 4.44e-01 72.5% 98.9%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.65 52.0 5.09e-01 90.0% 79.8%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.65 54.0 4.18e-01 92.5% 88.9%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.62 51.0 4.95e-01 93.8% 93.5%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.61 51.0 4.66e-01 93.8% 71.7%
1uz3B00 1.10.1240.40 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › ENT domain 0.59 49.0 4.68e-01 98.8% 77.3%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 42.0 4.28e-01 83.7% 76.9%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.59 44.0 3.87e-01 97.5% 54.3%
2vqgA00 1.10.10.1280 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C 0.58 43.0 4.44e-01 86.3% 84.2%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 3.97e-01 92.5% 89.3%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 46.0 3.82e-01 88.7% 94.6%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 41.0 3.49e-01 76.2% 47.4%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 4.08e-01 70.0% 81.9%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 49.0 3.73e-01 100.0% 45.9%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.57 43.0 4.32e-01 93.8% 82.3%
1vu2201 1.20.58.1070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 45.0 3.59e-01 100.0% 41.8%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.80e-01 92.5% 86.7%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.55 44.0 4.11e-01 90.0% 99.0%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.55 40.0 3.04e-01 77.5% 37.8%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.54 37.0 3.46e-01 71.2% 74.3%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 4.04e-01 87.5% 95.0%
4k84A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.54 45.0 3.40e-01 92.5% 60.7%
1nf1A01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.53 31.0 3.09e-01 71.2% 55.4%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 37.0 3.66e-01 76.2% 71.4%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 4.12e-01 95.0% 100.0%
4jbeB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 43.0 3.00e-01 97.5% 83.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3187172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 6.25e-01 90.0% 100.0%
3184216 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.72 54.0 5.85e-01 86.3% 96.9%
3880410 164.1.1.3 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › Get2_like 0.69 57.0 5.05e-01 90.0% 69.6%
4021919 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 51.0 5.44e-01 80.0% 98.5%
5001551 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.68 57.0 4.46e-01 91.3% 79.4%
3063543 109.23.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.67 60.0 5.09e-01 100.0% 87.8%
3720948 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.45e-01 91.3% 89.9%
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 4.57e-01 86.3% 59.1%
3818391 109.46.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd 0.66 44.0 3.77e-01 88.7% 43.2%
5045348 604.34.1.0 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.64 57.0 5.67e-01 100.0% 94.1%
3261028 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.62 48.0 4.79e-01 86.3% 78.8%
3181221 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 50.0 3.97e-01 92.5% 85.0%
3187480 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.91e-01 88.7% 100.0%
3716055 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.57 43.0 2.86e-01 80.0% 76.6%
3796461 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 46.0 4.78e-01 88.7% 94.7%
None — 0.56 43.0 4.04e-01 83.7% 82.0%
3681983 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 4.42e-01 98.8% 78.0%
3675610 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 43.0 3.97e-01 90.0% 65.7%
3283686 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 36.0 3.84e-01 72.5% 77.1%
3677130 103.1.1.34 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.54 47.0 3.97e-01 97.5% 62.2%
3299261 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 42.0 3.76e-01 92.5% 59.2%
3422463 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 43.0 4.04e-01 95.0% 74.3%
5069958 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 37.0 3.45e-01 73.8% 59.0%
3739861 101.1.2.198 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.51 42.0 3.77e-01 91.3% 71.3%