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AP018399.1__BBA65444.1__X__00296

Bact-Vir

AP018399.1__BBA65444.1__X__00296

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

62.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-103
PDB
Domain cluster: rep: scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00109__D17-83
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 58.0 5.63e-01 73.4% 97.7%
3boqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 5.28e-01 88.6% 60.0%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.04e-01 75.9% 94.9%
3hgtA00 3.40.50.12360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 45.0 3.10e-01 77.2% 93.4%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.61 52.0 4.36e-01 98.7% 78.1%
2ovbA02 1.25.40.460 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 30.0 3.10e-01 83.5% 53.2%
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.54 46.0 4.30e-01 97.5% 81.7%
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.54 41.0 3.90e-01 87.3% 96.0%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.54 29.0 3.06e-01 83.5% 55.4%
3ahcA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.53 43.0 2.90e-01 97.5% 88.1%
6b04C00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 44.0 2.97e-01 97.5% 42.4%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.50 42.0 4.21e-01 100.0% 96.2%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 39.0 3.31e-01 84.8% 54.5%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.50 38.0 3.63e-01 86.1% 92.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994857 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.88 67.0 7.15e-01 79.7% 100.0%
5002796 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 60.0 6.54e-01 73.4% 100.0%
4988665 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 59.0 6.47e-01 73.4% 100.0%
4939633 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.84 59.0 6.58e-01 73.4% 100.0%
3588502 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.81 59.0 6.05e-01 75.9% 97.3%
5081088 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.81 65.0 6.44e-01 84.8% 89.2%
5043931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 7.06e-01 93.7% 100.0%
5008624 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 60.0 6.19e-01 87.3% 88.0%
5024765 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.77 61.0 6.14e-01 84.8% 92.5%
4943733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 57.0 5.90e-01 78.5% 96.0%
5041367 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.75 60.0 4.05e-01 84.8% 54.8%
3958811 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 59.0 4.95e-01 84.8% 55.4%
3696929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.91e-01 81.0% 94.3%
3788579 101.1.2.201 ↗ alpha arrays › HTH › HTH › winged helix domain › MTR4-like_stalk 0.71 51.0 5.26e-01 74.7% 89.3%
2406142 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.71 55.0 5.72e-01 81.0% 89.0%
3592510 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.70 61.0 4.47e-01 93.7% 49.2%
3277870 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.93e-01 82.3% 71.0%
3172849 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.69 60.0 4.21e-01 93.7% 41.3%
3702436 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.69 53.0 5.50e-01 82.3% 88.0%
3593645 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.69 60.0 4.31e-01 93.7% 74.8%
3396048 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.68 60.0 4.33e-01 94.9% 45.7%
3607149 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.68 59.0 4.42e-01 93.7% 51.4%
3787000 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.68 59.0 4.34e-01 93.7% 63.1%
3717771 4156.1.1.11 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N 0.68 59.0 4.32e-01 93.7% 47.5%
3600841 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.68 58.0 4.25e-01 93.7% 60.5%
3271637 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.67 58.0 4.21e-01 93.7% 46.7%
3197660 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.67 59.0 4.09e-01 94.9% 40.0%
3611875 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.67 58.0 4.27e-01 93.7% 49.7%
4952959 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 47.0 4.96e-01 74.7% 98.6%
3972555 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.41e-01 93.7% 72.9%
3595132 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.66 57.0 4.29e-01 93.7% 51.9%
4050998 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.65 50.0 3.81e-01 84.8% 76.8%
3225159 101.1.2.460 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_DDX60 0.65 49.0 4.43e-01 79.7% 91.4%
4427696 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.63 57.0 3.90e-01 98.7% 68.9%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.63 58.0 4.33e-01 100.0% 63.2%
3565654 101.1.2.460 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_DDX60 0.63 50.0 4.40e-01 84.8% 74.8%
3479772 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 38.0 3.98e-01 75.9% 72.9%
3201044 7087.1.1.1 ↗ alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.54 46.0 3.78e-01 98.7% 83.5%
3598953 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 47.0 3.03e-01 98.7% 28.1%
4002350 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 2.84e-01 81.0% 25.5%
1687153 3962.2.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes › ISP_coupler 0.53 44.0 3.68e-01 96.2% 91.3%
4605910 101.1.1.213 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.53 41.0 3.98e-01 84.8% 76.7%
5065894 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.51 34.0 3.40e-01 87.3% 64.7%